Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq25128 188 7e-43 >seq25128 Length=30855 Score = 188 bits (208), Expect = 7e-43 Identities = 777/1215 (64%), Gaps = 13/1215 (1%) Strand=Plus/Minus Query 37074 ATTCTTTATGTCATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGA 37131 |||||| ||||||| || ||| | || | | || ||| || | ||| | || || Sbjct 19906 ATTCTTCATGTCATCATCCCATAAAT--CCAGTTCGGTTAAATCCCGCAACAAATGATGA 19849 Query 37132 TTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGT 37191 ||||| || | || ||||| || || || | || || || || || |||||| || Sbjct 19848 TTTACCACATTGAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGC 19789 Query 37192 TCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATT 37251 |||| |||||||||||||| | || || | |||||||| || |||||||| || | Sbjct 19788 TCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCCACA 19729 Query 37252 AGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCAT 37311 || || ||||| | ||||| || ||| || |||||| || |||||||||| Sbjct 19728 AGCAGCGAGTTTCTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAA 19669 Query 37312 AAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAA 37371 | | ||| || |||| ||||||||| || || ||||| || || ||| | ||| || Sbjct 19668 AGGTTTGTGGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAA 19609 Query 37372 TCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCG 37431 | || || ||||| || |||| ||| ||| || || ||||| | || || || Sbjct 19608 CCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCA 19549 Query 37432 GCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAAT 37491 |||| || || |||||||| || || ||| | | | |||| || || || | Sbjct 19548 CCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAG 19489 Query 37492 GCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTA 37551 | | ||| || | || || | || || || |||||||| || || || ||||| | | Sbjct 19488 GGAAAGCGCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGA 19429 Query 37552 TGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTA 37611 ||| | ||| ||| | | || || ||||| ||||||||||| || ||||| Sbjct 19428 TGTCTTAAATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTG 19369 Query 37612 TTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTA 37671 || | |||| | | |||| |||| | | | || | ||| ||| || Sbjct 19368 TTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTTAGTTTCTTGAAATCGAATGTTTTC 19309 Query 37672 T---TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCT 37728 | | | ||||| || |||| | || ||| | | ||| || || |||| ||||| Sbjct 19308 TCTGAAGTCACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATC- 19250 Query 37729 TCGTTACTAA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATT 37787 || | || ||| | ||| || || ||||| || || || | || || || | ||| Sbjct 19249 GGGTGCCGAATATTCAACAATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATT 19190 Query 37788 GCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTC 37847 |||||| || | || ||||| ||||| | || || ||||| || || || Sbjct 19189 CTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGAAGAGCATGTACGGAGTGCCAGTCTC 19130 Query 37848 TATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAA-CGATCGCTTTAAttt 37906 | ||||| || | ||| | | ||| | | || |||||||| | || ||| Sbjct 19129 AACTTGAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTT-GCGC 19071 Query 37907 ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATA 37966 || | || || | | |||| | || | ||| |||| |||||| || || | Sbjct 19070 GACCCTCGCTCTCATACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCA 19011 Query 37967 ATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCA 38026 | || ||||| | | ||||||| || ||||| || |||| ||| || || | || Sbjct 19010 AGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCTTCCACACGCTTCA 18951 Query 38027 TAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTTC 38085 |||| | ||| |||| ||| || || ||| || | ||| | ||| | ||||| || Sbjct 18950 TAAACAGATCGGGTATCCACAAGGC-GTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTG 18892 Query 38086 CCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAA 38145 || |||||| | | | | || || || ||||| | ||||| ||||| | ||| Sbjct 18891 CCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAA 18832 Query 38146 ATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTA 38205 || | | || ||||| | || | || || |||| | ||| | | | |||||| Sbjct 18831 ATGGCAAAAGCGCCTGGCCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTA 18772 Query 38206 TATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTA 38265 | | ||| | ||| || || | |||||| || |||| || | || | || | || Sbjct 18771 AACACTCTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTG 18712 Query 38266 CCCTTAGCTCGTATA 38280 ||||| || || ||| Sbjct 18711 CCCTTGGCACGAATA 18697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468370456217760