Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq25128 457 1e-123 seq19105 279 7e-70 >seq25128 Length=30855 Score = 457 bits (506), Expect = 1e-123 Identities = 1258/1911 (66%), Gaps = 34/1911 (2%) Strand=Plus/Minus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 |||| | |||||||||||| | | || || || || || || ||||| |||||||| Sbjct 20196 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCT 20137 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 || || || || |||| | | ||||| || |||| ||| || | || Sbjct 20136 GTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGGT 20077 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || || | || || || | |||||||| || || || || || || | || || ||| Sbjct 20076 TCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCC 20017 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 65068 || || ||| | | ||| | |||||||| | ||||| |||| || | || | || Sbjct 20016 ATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACT-TC 19958 Query 65069 TTCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 65125 | |||| | || | | || || ||||| |||| | || || || |||||| || Sbjct 19957 CTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCAT 19898 Query 65126 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 65185 ||||||| |||||| | ||||||||| | | | | ||| |||| || || | Sbjct 19897 GTCATCATCCCATAAATCCAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATT 19838 Query 65186 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 65245 || ||||| ||||| || | || |||||||| || |||||||| || | ||||| Sbjct 19837 GAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTC 19778 Query 65246 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-T 65304 |||||| |||| || || ||||| ||||| || ||||| || ||||| || | | | | Sbjct 19777 ATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCCAC-AAGCAGCGAGT 19719 Query 65305 TTCTAAGACCGTATGTTCT--GATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 65362 |||||| || ||| ||| |||||| |||||||| ||||| |||||| | | Sbjct 19718 TTCTAACGCC--ATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGTTTGT 19661 Query 65363 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 65421 ||| || ||||| || || || | | || | || | | Sbjct 19660 GGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAA-CCAGCGT 19602 Query 65422 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 65481 | || || || || || ||||| | ||| || |||||||| ||||| | ||||| || | Sbjct 19601 AGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGT 19542 Query 65482 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 65541 | |||||||||||||||| || ||| || | |||| || ||| | ||| | Sbjct 19541 AGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAGC 19482 Query 65542 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 65601 | ||||| || ||||| || || || ||||| ||||| || || || | |||||| Sbjct 19481 GCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTA 19422 Query 65602 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 65661 ||| || | | || || || | ||||| ||||| ||||| || ||||| || | || Sbjct 19421 AATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAAT 19362 Query 65662 TTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA 65718 ||||| ||| || || || ||||| ||||| ||||| ||| | ||| Sbjct 19361 TTCTGGTGACAGTT---TTAGTAACTTCCTTTAGTTTCTTGAAATCGAATGTTTTCTCTG 19305 Query 65719 ---TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 65775 | |||||||| ||||| || | ||||||| ||| || ||||| | ||||| | Sbjct 19304 AAGTCACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTG 19245 Query 65776 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 65835 ||| ||||| | || || ||||| || || || || |||||||| || | ||| || | Sbjct 19244 CCGAATATTCAACAATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCT 19185 Query 65836 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 65895 |||| ||||| |||| || | || || | || ||| | ||||| ||||| |||| | Sbjct 19184 GATTGCTCTTCCTGTTGCAAGAGTCTTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTT 19125 Query 65896 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCTTT 65954 ||||||| | ||| || | ||| | | | || || || | | |||||| | | Sbjct 19124 GAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTGCGCGACCCT 19065 Query 65955 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 66014 | || || || |||||||| || || || || |||||||| | ||||| || Sbjct 19064 -CGCTCTCATACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCG 19006 Query 66015 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 66074 ||||| | | ||||||| || |||||| || | | | | ||| || |||||||| Sbjct 19005 GGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCTTCCACACGCTTCATAAAC 18946 Query 66075 AGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 66134 ||||| || ||||| | || || | ||| | | ||| || || || || || || Sbjct 18945 AGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTG 18886 Query 66135 TTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCC 66194 |||||||| || || | |||| | | ||||| ||||||| ||||||| ||| ||||| Sbjct 18885 TTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCA 18826 Query 66195 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 66254 | | | || ||||| ||| || || ||||| | || | ||| |||||| | ||| Sbjct 18825 AAAGCGCCTGGCCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACT 18766 Query 66255 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTT 66314 || | ||| || | | |||||| || || ||||| || || |||| || | || | Sbjct 18765 CTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTG 18706 Query 66315 GCACGAATATTA--CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 66372 ||||||||| | | ||||| | || || || || || ||| ||||| | ||| | Sbjct 18705 GCACGAATACAATGCACATTGA--GTCCAATGCCACCAGCGGATTTGGAGATCATTGCAC 18648 Query 66373 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAAGTAGAA 66429 | | | | | | | ||||| || || ||| | |||| ||||| | || | Sbjct 18647 ACTGCTCGACGGACTTGAAAATGCCTTCGATGGAATCGGAAACCAT--TGTTA-GAAGGA 18591 Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489 |||| ||||| ||| ||||| | || | ||| ||||| || || || || |||| Sbjct 18590 AACACGATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAGCGTTGGCGATGCATGCG 18531 Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 66549 |||| | ||| || | |||||||| ||||| | ||| || || || || || Sbjct 18530 TAAAATAGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCAT 18471 Query 66550 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 66609 | ||||| | || || | ||| | ||||||||| || | ||| |||| ||| || | Sbjct 18470 GGATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGA 18411 Query 66610 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 66669 | || | ||| || || || | || || || |||||||||||||| ||| || | Sbjct 18410 TCTTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCAC 18351 Query 66670 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 66720 | || || || || | ||||| || ||| | ||| ||||| |||| Sbjct 18350 GATCATAGATGATCGCTGAGTTCAGGCGATCTGAGTTTTTCTTAACGACAT 18300 >seq19105 Length=237168 Score = 279 bits (308), Expect = 7e-70 Identities = 605/896 (68%), Gaps = 22/896 (2%) Strand=Plus/Plus Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 35867 |||||||||| |||||| | ||| |||||| || || |||||||||| Sbjct 36563 TTTAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCGATGTAACTCCCATGC 36622 Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927 || ||||||||||| || ||||| || || ||||| || || || || || | | Sbjct 36623 GCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCT 36682 Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 35987 ||||||| ||||||||| | || ||||| || | || | ||| | || Sbjct 36683 CCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACGCCAAGCTCA---ACCA 36739 Query 35988 AT---CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 36044 || | ||| |||||||| || |||||| ||||| |||| ||||| || || | Sbjct 36740 ATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCA 36799 Query 36045 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 || || || || || | || || || || || ||||||| || || || ||||| Sbjct 36800 AGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTAT-- 36857 Query 36105 TAGATATTACTGTTTC-TTC---ACTCGGTGGATACAATAAATGTTTAAACATCAAACAT 36160 ||| | | || | | ||| ||| || | | || ||||||| ||||| || || Sbjct 36858 --GATTTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT-AAGCAC 36914 Query 36161 -GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 36219 || || || || || ||||| || || | | || ||||||||||| || || ||||| Sbjct 36915 CGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCC 36974 Query 36220 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 36279 ||||| || |||||||| || ||||| || ||||| ||||| ||| ||||| || Sbjct 36975 AGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGAT 37034 Query 36280 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CTGTC--ATGTAT 36336 ||||| || || ||||| ||||||| | || ||| | |||| | || | || Sbjct 37035 GCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGAT 37094 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 ||| ||||||| || |||||| || ||| ||||| || || || ||||| || Sbjct 37095 CCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAA 37154 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 |||||||| | | || | ||| | | ||| || ||||| | | ||| |||||||| Sbjct 37155 GAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTC 37214 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516 ||||| | || || ||||| || || || || || || || | |||||||| | ||| Sbjct 37215 GGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTG 37274 Query 36517 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 36576 |||||| | ||| ||||| | | |||||| || || ||||| ||| || ||||| Sbjct 37275 CACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAA 37334 Query 36577 AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATT 36636 || ||||| ||||| ||| |||| || || || || || ||||||| | Sbjct 37335 GAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGT 37394 Query 36637 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 36692 || || || || | |||||||||||| || ||||| || ||||| || |||| || Sbjct 37395 CATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCCTGTT 37450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657955981425360