Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq25128 174 2e-38 seq24486 113 4e-20 seq20348 102 8e-17 >seq25128 Length=30855 Score = 174 bits (192), Expect = 2e-38 Identities = 692/1073 (64%), Gaps = 56/1073 (5%) Strand=Plus/Minus Query 153127 ACGGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACG 153186 |||| ||||| ||||| || ||| | || || || || | ||||| ||||| | Sbjct 19793 ACGGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAG 19734 Query 153187 CCACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGT-GACCAG 153245 ||||||||| ||| || | | || || | || | || ||||||| | || ||| Sbjct 19733 CCACAAGCAGCGAGTTTCTAACGCCATGCTCTT------TGATTTTCAATTTTAGAGCAG 19680 Query 153246 TCCCATAACGAAG-----TAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGC 153300 ||| || | ||| | ||| || | ||||| |||||| |||| || || | || Sbjct 19679 TCCAATCCCAAAGGTTTGTGGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGC 19620 Query 153301 TAGCTTTGCTACCGGCAAACGTGCTATACGGCTCACTGTCA----GACGCCAGTTTCAAA 153356 | | | ||| || | || ||| || || ||| || ||||| | || Sbjct 19619 TCACCGGACAACCAGCGTAGGTTTCATAGGG---ACCGTCCTTTTGA-GCCAGCTCACAA 19564 Query 153357 CTGGCATCGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCA 153416 ||||| || || || ||| || | |||||| | ||||| | || || || ||||| Sbjct 19563 CTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCT 19504 Query 153417 GCATCGCTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCA 153476 || ||| | || || | ||||| || | || || ||||| || || |||| |||| Sbjct 19503 TTGTCACTCTCATAGGGAAAGCGCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCA 19444 Query 153477 ATGCCTATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTG 153536 ||||| ||||||||||| | | ||| ||||| ||||| | | |||||| ||||| Sbjct 19443 ATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTG 19384 Query 153537 CGGTCGATAATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGA 153596 || || ||||| || ||| | | |||| ||| || | | |||| Sbjct 19383 ATATCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACT---TCCTTTAGTTTC 19327 Query 153597 ---AAATCAAACGTT--CCATTAA-TGATATATTTGTTGACGGCAATCGACGCCAAGTTG 153650 ||||| || ||| | | || | | | | | || | ||| ||||| ||||| ||| Sbjct 19326 TTGAAATCGAATGTTTTCTCTGAAGTCACAAACATATTCAAGGCTATCGATGCCAAATTG 19267 Query 153651 CAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCAT 153710 || |||||| | || ||||| || |||||| || ||||| | || | ||||||||| Sbjct 19266 CAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCGGTGCAGAGGTTGCTGCAT 19207 Query 153711 TTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATG 153770 || || ||| ||| |||||||| || | ||| |||| ||| ||| | |||||| Sbjct 19206 TTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGAAGAGCATG 19147 Query 153771 TATGGTGTGCCGGTTTCGGCTTGAATTTCTATAATAG--TACGCATCAATGTG------- 153821 || || ||||| || || ||||| ||| | ||| | ||| | | | || Sbjct 19146 TACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTA 19087 Query 153822 ACCGCGGGCATTTGATCGCGAAACTGGCCCTTGTCTTCGTAGTGTTTGTACCAGTATTCA 153881 | | | | ||||| ||||| |||| | || || | | | ||| | ||| Sbjct 19086 ATCACACG-ATTTG--CGCGA------CCCTCGCTCTCATACTTTGTATACAGCTTCTCA 19036 Query 153882 AACTCAT--CACCAAACGTATTGTTAAGCTCGGGACATTCGTTGGGACACATCAGTGACC 153939 || |||| | |||||||| || |||| ||||||| | || ||||||| ||| |||| Sbjct 19035 AAGTCATCCCCCCAAACGTCTT-CCAAGC-CGGGACACTTGTGAGGACACAACAGCGACC 18978 Query 153940 ATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACCCATAGGGCGTTCATCA 153999 | |||| ||| || || |||||| | |||||| | ||| | ||||| | | Sbjct 18977 AATCCTCATTGGCTTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTAGAAGA 18918 Query 154000 GGTCGCGCGCTTTCGTG-TCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTCCATT 154058 | || || ||| | ||| ||||| |||| |||| | || |||| || | Sbjct 18917 GATCACGAGCTCT-GTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAG 18859 Query 154059 ATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTTTACGCTTGCCG---CCC 154115 || ||| ||||||| ||||||| ||||| || ||||||| ||||||||| || Sbjct 18858 ATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGCCGCTTGCCGCCACCT 18799 Query 154116 TGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGACC 154168 |||| || | ||| ||| ||| || || || | |||||||| | || ||| Sbjct 18798 TGATCGACATAACGAGCCACATTATTAAACACTCTGAGCATGGGCACCAAACC 18746 >seq24486 Length=213816 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || ||||| | || ||||| || || ||||| || ||| | Sbjct 88371 CCACCACGCAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 88312 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || ||||| |||||||||| || ||||| || || Sbjct 88311 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGA 88252 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||| | |||||||||| Sbjct 88251 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACC 88192 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| ||||| ||||| ||||| |||||||| Sbjct 88191 TCCAAGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCAT 88145 >seq20348 Length=30608 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | |||||||||||||| || || |||||| | |||| | ||||| Sbjct 12901 ACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCC 12842 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || || ||| |||||| ||| || ||||| ||||| || ||||||||||| || Sbjct 12841 AATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTC-CTG 12783 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | ||| | || || | || || ||||||| || | ||||| Sbjct 12782 AATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 12723 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| ||||| |||||||| Sbjct 12722 ACCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495900584116800