Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq25128 535 6e-147 seq19105 302 6e-77 >seq25128 Length=30855 Score = 535 bits (592), Expect = 6e-147 Identities = 1272/1905 (67%), Gaps = 22/1905 (1%) Strand=Plus/Minus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 |||| | |||||||||||| | | || || || || || || ||||| |||||||| Sbjct 20196 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCT 20137 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 || || || || |||| | ||||||| || |||| ||| || | || Sbjct 20136 GTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGGT 20077 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || | || || || | |||||||| || || || || || || | || || ||| Sbjct 20076 TCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCC 20017 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 78947 || || ||| | | ||| | |||||||| | ||||| |||| || | || | || Sbjct 20016 ATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACT-TC 19958 Query 78948 TTCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004 | |||| | || | | || || ||||| |||| | || || || |||||| || Sbjct 19957 CTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCAT 19898 Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 79064 || |||| |||||| | ||||||||| | | | | ||| |||| || || | Sbjct 19897 GTCATCATCCCATAAATCCAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATT 19838 Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 || ||||| ||||| || | || |||||||| || ||||| || || | || || Sbjct 19837 GAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTC 19778 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA-T 79183 |||||| |||| || || ||||| |||||||| ||||| || ||||| || | | | | Sbjct 19777 ATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCCAC-AAGCAGCGAGT 19719 Query 79184 TTCTAAGACCGTATGATCT--GATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGA 79241 |||||| || ||| ||| |||||| |||||||| |||||||||||| | | Sbjct 19718 TTCTAACGCC--ATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGTTTGT 19661 Query 79242 CGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACT-AGCGTATGATCCTGTGT 79300 || | ||| | ||| || || ||||| || || || | || | | || | || Sbjct 19660 GGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAA-CCAGCGT 19602 Query 79301 ATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAAT 79360 | |||||||| || || ||||||| || | |||||||| ||||| | || || || | Sbjct 19601 AGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGT 19542 Query 79361 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAAT 79420 | ||||||||||| |||| || |||||| | |||| || ||| | ||| | Sbjct 19541 AGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAGC 19482 Query 79421 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 79480 | ||||| || ||||| || || || ||||| ||||| || || || | |||||| Sbjct 19481 GCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTA 19422 Query 79481 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 79540 ||| || | | || || || | ||||| ||||| ||||| || ||||| || | || Sbjct 19421 AATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAAT 19362 Query 79541 TCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA--- 79597 | ||| | ||| || ||||||||||| ||||| ||| | ||| Sbjct 19361 TTCTGGTGACAGTTTTAGTAACTTCCTTTAGTTTCTTGAAATCGAATGTTTTCTCTGAAG 19302 Query 79598 TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 79657 | |||||||| ||||| || | ||||||| ||| || ||||| | ||||| | ||| Sbjct 19301 TCACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTGCCG 19242 Query 79658 CATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGAT 79717 ||||| | ||||| ||||||||||| || || || ||||| || | ||| || |||| Sbjct 19241 AATATTCAACAATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGAT 19182 Query 79718 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAG 79777 | ||||| |||| || | || || | || ||| ||||||| ||||| |||| |||| Sbjct 19181 TGCTCTTCCTGTTGCAAGAGTCTTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAG 19122 Query 79778 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GACTTGTATCTCTTTTCT 79836 |||| | ||| || | ||| | | | || || || | | || ||| | || Sbjct 19121 ATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTG-CGCGACCCTCG 19063 Query 79837 CTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA 79896 || || || | |||||| | || || || || |||||||| || || || || ||| Sbjct 19062 CTCTCATACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGA 19003 Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGA 79956 || | || |||||||| || |||||| || ||| | | || || |||||||| ||| Sbjct 19002 CACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCTTCCACACGCTTCATAAACAGA 18943 Query 79957 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 80016 || || ||||| | || || ||||| | | ||| ||||| || || || || ||| Sbjct 18942 TCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTC 18883 Query 80017 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 80076 ||||| || || | |||| | | ||||| |||||||| ||||||| ||| ||||| | | Sbjct 18882 TTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAA 18823 Query 80077 ACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 80136 | || || || ||| || || ||||| | || | ||| |||||| | ||||| Sbjct 18822 GCGCCTGGCCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACTCTG 18763 Query 80137 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 80196 | ||| || | | |||||| || || ||||| || || |||| || | || ||||| Sbjct 18762 AGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTGGCA 18703 Query 80197 CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 80254 ||||| | | | |||| || || || || || || ||| ||||| | ||| || Sbjct 18702 CGAATACAATGCACATTG--AGTCCAATGCCACCAGCGGATTTGGAGATCATTGCACACT 18645 Query 80255 GTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGC 80314 | | | | | | ||||| || ||| ||| || ||| | || || ||||| Sbjct 18644 GCTCGACGGACTTGAAAATGCCTTCGATGGAATCGGAAACCATTGTTAGAAGGAAACACG 18585 Query 80315 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 80374 ||||| ||| ||||| | || | ||| ||||| || || || || |||||||| Sbjct 18584 ATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAGCGTTGGCGATGCATGCGTAAAAT 18525 Query 80375 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTC 80434 | ||| || | |||||||| ||||| | ||| || || || || ||| |||| Sbjct 18524 AGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCATGGATTC 18465 Query 80435 CTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 80494 | | ||| || | ||| | ||||||||| || | ||| |||| ||| ||| || || | Sbjct 18464 CAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGATCTTTA 18405 Query 80495 ACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 80554 ||| || || || | || || || |||||||||||||| ||| || || || | Sbjct 18404 GCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCACGATCAT 18345 Query 80555 AAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 80599 | || || | ||||| || ||| | ||| ||||| |||| Sbjct 18344 AGATGATCGCTGAGTTCAGGCGATCTGAGTTTTTCTTAACGACAT 18300 >seq19105 Length=237168 Score = 302 bits (334), Expect = 6e-77 Identities = 577/844 (68%), Gaps = 11/844 (1%) Strand=Plus/Plus Query 49658 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCA 49717 |||||||||| || ||||||||||| || ||||| || || ||||| || |||| Sbjct 36611 TAACTCCCATGCGCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCA 36670 Query 49718 ATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA 49777 | || || | |||||||| || ||||| | || ||||| || | || | Sbjct 36671 AAGAGATCATCTCCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACGCCAA 36730 Query 49778 ATTCAGAAATCAAT---CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 49834 ||| | |||| | ||| |||||||| || |||||| ||||| |||| | Sbjct 36731 GCTCA---ACCAATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGT 36787 Query 49835 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 49894 |||| || || | || || || || || | || || || || || ||||| | || | Sbjct 36788 TCATGCCAATCAAGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAG 36847 Query 49895 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 49954 |||| ||||| || | | | ||| ||| || | |||| ||||||| |||| Sbjct 36848 CATCCGTTATGATTTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACA 36907 Query 49955 TCAAACAT-GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 | || || || || || || |||||||| || || | | || | ||||||||| || Sbjct 36908 T-AAGCACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAAT 36966 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 || ||||| ||||| || |||||||| || ||||| || ||||| ||||| |||| Sbjct 36967 GTAAGTCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTG 37026 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTC 50132 |||||||| ||||| || || ||||| |||| || | || ||| | |||| || || Sbjct 37027 AAGAAGATGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTC 37086 Query 50133 --ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | ||||| ||||||| || |||||| || ||| ||||||||||| ||| Sbjct 37087 GAAGAGATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATG 37146 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 ||||| |||||||||| | | || | ||| | | ||| || || || | | ||| Sbjct 37147 GCATTGAAGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTG 37206 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 |||||||| ||||| | || || ||||| ||||| || || || || || | |||||| Sbjct 37207 TACATTTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCG 37266 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 || | |||||||||| | ||| ||||| | | |||||| || || ||||| ||| Sbjct 37267 GTCACCTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAA 37326 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 || ||||| || ||||| ||||| ||| ||||| || || || || || | Sbjct 37327 GCAGCAAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCC 37386 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 |||||| | || || || || | ||| |||||||| || ||||| || ||||| || ||| Sbjct 37387 CAATCAGTCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCC 37446 Query 50491 TTTT 50494 | || Sbjct 37447 TGTT 37450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718032184300560