Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq19105 187 2e-42 >seq19105 Length=237168 Score = 187 bits (206), Expect = 2e-42 Identities = 572/876 (65%), Gaps = 14/876 (2%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 |||||||| ||||||||| ||| ||||| || || || |||| ||||| Sbjct 36565 TAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCGATGTAACTCCCATGCGC 36624 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||||| ||| | || || |||||||| ||||| || |||| || || | ||| Sbjct 36625 TGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCTCC 36684 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACA-CTTTATCACAACCTAGTTCTAATAGTAA 13702 || || |||||||| ||| | | | ||| ||| || || || | | || Sbjct 36685 ATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACG-CCAAGCTCAACCAATAG 36743 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 | |||||| | |||||| ||||||| ||||| | | |||| ||||| || || | || Sbjct 36744 GCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAGTT 36803 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 || || | || ||| | || || | || |||| |||||| || |||| || Sbjct 36804 GACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGAT--- 36860 Query 13823 TGTAATAATC---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC-GCAA 13878 | ||| || || | ||| | | | ||||| || || || ||| |||| Sbjct 36861 TTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT-AAGCACCGCAA 36919 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | |||||||| || || ||||| | | || | |||||| || ||||| | ||| |||| Sbjct 36920 AGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGCA 36979 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 | | ||| || || || | ||| || || | ||||| ||| ||||| || || | Sbjct 36980 TAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCTT 37039 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14058 |||| |||||||| || || | ||||| ||||| || || || ||||| Sbjct 37040 CAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGATCCAAG 37099 Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14118 |||||| || | || |||| | ||| |||||||| ||||| || | || Sbjct 37100 AAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAAGAGAT 37159 Query 14119 ATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14176 | || || | || | | ||| || | || ||||| || | || |||||||| || Sbjct 37160 AGTCTCGCTGATGAGGATCCCTGATAT--AGGTGTCAATGAGCACACTGTACATTTCGGA 37217 Query 14177 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTAC 14236 || | || ||||| || ||||| || ||||||||||| | || || | | || || Sbjct 37218 ATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTGCAC 37277 Query 14237 TTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 ||| | ||| | |||| ||| |||||| ||||| || |||||| ||| ||||| || Sbjct 37278 TTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAAGAA 37337 Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAA 14356 ||||| | | || || | |||| | || | || || |||||| | | Sbjct 37338 GGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGTCAT 37397 Query 14357 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 ||||| || ||||| ||||| || || ||||| || Sbjct 37398 GTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAA 37433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479569965603600