Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq25128 444 8e-120 seq19105 284 2e-71 >seq25128 Length=30855 Score = 444 bits (492), Expect = 8e-120 Identities = 1224/1867 (66%), Gaps = 22/1867 (1%) Strand=Plus/Minus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTAGATAGTACATGCC 70850 |||| | ||| || ||||| | | || || |||||| || || ||||| ||||| || Sbjct 20196 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTT-GTGCGCAGATAATACATTCC 20138 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910 ||| || || || |||| | | ||||| || |||| ||| ||| | || Sbjct 20137 TGTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGG 20078 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 ||||| | |||||| || | || ||||| || || || || || || | || || || Sbjct 20077 TTCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGC 20018 Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 71029 ||| || ||| | | ||| | |||||||| | ||||| |||| || | || | | Sbjct 20017 CATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACT-T 19959 Query 71030 CTTCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086 | | |||| | || | | || || ||||| |||| | ||||| || ||| || | Sbjct 19958 CCTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCA 19899 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 | || |||| |||||| | ||||||||| | | | | |||| |||| || || | Sbjct 19898 TGTCATCATCCCATAAATCCAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACAT 19839 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 || ||||| ||||| || | | |||||||| || |||||||| || | |||| Sbjct 19838 TGAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACT 19779 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266 ||||||| |||| || || ||||| ||||| || ||||| || ||||| | || | Sbjct 19778 CATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCCACAAGCAGCGAGT 19719 Query 71267 TTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATG 71326 |||||| ||||| | |||||| |||||||| ||||| |||||| | | | Sbjct 19718 TTCTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGTTTGTGG 19659 Query 71327 GTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCTGCATAT 71385 || || || || || | || | | || || || Sbjct 19658 GTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAA-CCAGCGTAG 19600 Query 71386 GTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAA 71445 || || || || || || |||| || || |||||||| ||||| | || ||||| || Sbjct 19599 GTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGTAG 19540 Query 71446 ATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTT 71505 ||||||||||| |||| || |||||| | |||| || ||| | ||| | Sbjct 19539 ATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAGCGC 19480 Query 71506 AAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTA 71565 | ||||| || ||||| || || || ||||||||||| || || || | ||||| | Sbjct 19479 ATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTAAA 19420 Query 71566 TTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 71625 || || | | || || || | ||||| ||||| ||||| || ||||| || | |||| Sbjct 19419 TTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAATTT 19360 Query 71626 CTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TT 71682 ||| | ||| || ||||||||||| ||||| ||| | ||| | Sbjct 19359 CTGGTGACAGTTTTAGTAACTTCCTTTAGTTTCTTGAAATCGAATGTTTTCTCTGAAGTC 19300 Query 71683 ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 ||||||| |||||||| | ||||||| ||| || ||||| | ||||| | | | | Sbjct 19299 ACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTGCCGAA 19240 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| | |||||| ||||| || || || || |||||||| || | ||| || ||||| Sbjct 19239 TATTCAACAATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGATTG 19180 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 ||||| |||| || | || || | || || ||||||| ||||| |||| |||||| Sbjct 19179 CTCTTCCTGTTGCAAGAGTCTTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGAT 19120 Query 71863 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTT 71922 || | ||| || | ||| | | | || || || | | || | || || Sbjct 19119 TCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTGCGCGACCCTCGCTC 19060 Query 71923 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACAT 71982 || || | |||||| | || || || || |||||| | | || || || ||||| Sbjct 19059 TCATACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGACAC 19000 Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCA 72042 | | ||||||| || ||||| || ||| | | || || |||||||| ||||| Sbjct 18999 TTGTGAGGACACAACAGCGACCAATCCTCATTGGCTTCCACACGCTTCATAAACAGATCG 18940 Query 72043 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 72102 || ||||| | || || ||||| | | ||| ||||| || || || || |||||| Sbjct 18939 GGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTT 18880 Query 72103 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 72162 || || || | |||| | | ||||| |||||||| ||||||| ||| ||||| | | | Sbjct 18879 TTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCG 18820 Query 72163 CCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 72222 || ||||| ||| || || ||||| | || | ||| |||||| | ||||| | | Sbjct 18819 CCTGGCCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACTCTGAGC 18760 Query 72223 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 72282 || || | | |||||| || | ||||| || || |||| || | || |||||||| Sbjct 18759 ATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTGGCACGA 18700 Query 72283 AT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 72340 || | ||| |||| || || || || || || ||| ||||| | ||| || | | Sbjct 18699 ATACAATGCACATTG--AGTCCAATGCCACCAGCGGATTTGGAGATCATTGCACACTGCT 18642 Query 72341 TTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAAGTAGAAAACAGC 72397 | | | | ||||| || || ||| | |||| |||| || || ||||| Sbjct 18641 CGACGGACTTGAAAATGCCTTCGATGGAATCGGAAACCAT--TGTT-AGAAGGAAACACG 18585 Query 72398 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 72457 ||||| ||| ||||| | || | ||| ||||| || || || || |||||||| Sbjct 18584 ATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAGCGTTGGCGATGCATGCGTAAAAT 18525 Query 72458 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTC 72517 | ||| || | |||||||| ||||| | ||| || || || || ||| |||| Sbjct 18524 AGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCATGGATTC 18465 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 72577 | | ||| || | ||| | ||| ||||| || | ||| |||| ||| ||| || || | Sbjct 18464 CAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGATCTTTA 18405 Query 72578 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 72637 ||| || || || | || || || |||||||||||||| ||| || || || | Sbjct 18404 GCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCACGATCAT 18345 Query 72638 AAATAAT 72644 | || || Sbjct 18344 AGATGAT 18338 >seq19105 Length=237168 Score = 284 bits (314), Expect = 2e-71 Identities = 606/896 (68%), Gaps = 22/896 (2%) Strand=Plus/Plus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774 ||||||| || ||||||| | ||| |||||| || || |||||||||| Sbjct 36563 TTTAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCGATGTAACTCCCATGC 36622 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 || ||||||||||| || ||||| || || || || || ||||| || || | | Sbjct 36623 GCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCT 36682 Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894 ||||||| || ||||| | || ||||| || | || | ||| | || Sbjct 36683 CCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACGCCAAGCTCA---ACCA 36739 Query 41895 AT---CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 || | ||| |||| || || |||||| ||||| |||| ||||| || || | Sbjct 36740 ATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCA 36799 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 || || || || || | || || || || || ||||||| || || || ||||| Sbjct 36800 AGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTAT-- 36857 Query 42012 TAGATCTTACTGTTTC-TTC---ACTCGGTGGATACAATAAATGTTTAAACATCAAACAT 42067 ||| | | || | | ||| ||| || | | || ||||||| ||||| || || Sbjct 36858 --GATTTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT-AAGCAC 36914 Query 42068 -GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 42126 || || || || |||||||| ||||| | | || ||||||||||| || || ||||| Sbjct 36915 CGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCC 36974 Query 42127 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGAT 42186 ||||| || |||||||| || ||||| || || || ||||| ||| |||||||| Sbjct 36975 AGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGAT 37034 Query 42187 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--CTGTCATGT-AT 42243 ||||| || || ||||| ||||||| | || ||| | |||| || | | || Sbjct 37035 GCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGAT 37094 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| ||||||| || |||||| || ||| ||||||||||| |||||||| || Sbjct 37095 CCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAA 37154 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 |||||||| | | || | ||| | | ||| || || || | | ||| |||||||| Sbjct 37155 GAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTC 37214 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 ||||| | || || ||||| ||||| || || || || || | |||||||| ||||| Sbjct 37215 GGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTG 37274 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 |||||| | ||| ||||| | | ||||||||| || ||||| ||| || ||||| Sbjct 37275 CACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAA 37334 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 || ||||| ||||| ||| |||| || | || | || ||||||| | Sbjct 37335 GAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGT 37394 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTT 42599 || || || || | ||| |||||||| || ||||| || |||||||| |||| || Sbjct 37395 CATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCCTGTT 37450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670918109969040