Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq25128 156 4e-33 seq20348 116 4e-21 >seq25128 Length=30855 Score = 156 bits (172), Expect = 4e-33 Identities = 546/842 (65%), Gaps = 48/842 (6%) Strand=Plus/Minus Query 156767 GCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTC 156826 ||||| || |||||||||| || ||| ||| || | ||||| || || | ||| Sbjct 19575 GCCAGCTCACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTG 19516 Query 156827 AATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAA 156886 | | ||||| || ||| | || || | ||||| || || || || ||||| || Sbjct 19515 AGCAATACGGCTTTGTCACTCTCATAGGGAAAGCGCATCAGAATTAAGGCGTCGGCAAAG 19456 Query 156887 CCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATA 156946 || |||| ||||||||| ||||||||||| | | ||| ||||| ||||| | Sbjct 19455 CCCTGAACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGCAGC 19396 Query 156947 GGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACT-ACATGTTTGACCACAGT 157005 || ||| ||||| |||||| ||||| |||||| | || | ||| |||| | | | | Sbjct 19395 GGATAGTAATTGATATCAATGATTTTGTTCAAATT-TCTGGTGACA-GTTTTAGTA-ACT 19339 Query 157006 GTGCAATAGTTGA---AAATCAAAAGTATCATT---ATTGATATATTTATTGACGGCAAT 157059 | | ||||| ||||| || || | | | | | | | |||| | ||| || Sbjct 19338 -TCCTTTAGTTTCTTGAAATCGAATGTTTTCTCTGAAGTCACAAACATATTCAAGGCTAT 19280 Query 157060 CGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACA 157119 ||| || | ||| || |||||| | || ||||| || |||||| || ||||| | || Sbjct 19279 CGATGCCAAATTGCAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCGGTGCA 19220 Query 157120 CAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTC 157179 | ||||||||||| || || ||| |||||||| || | |||||||| ||| Sbjct 19219 GAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTC 19160 Query 157180 CTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATG----------- 157228 ||| | | ||||||||| ||||| || || ||||| ||| | ||| Sbjct 19159 TTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAAG 19100 Query 157229 ---TTGCGCATTAATGTAACCGCGGGCATTTGCTCGCGAAACTGGCCTTTATCCTCGTAA 157285 ||| || ||||| || ||||| ||||| || || ||| || Sbjct 19099 AGTTTGTGCTTTAATCACAC------GATTTG--CGCGACCCTCGC------TCTCATAC 19054 Query 157286 TGTTTGTACCAGTATTCAAAGTCAT--CACCATACGTATCGTTGAGCTTAGGACACTCGT 157343 | | | ||| | |||||||||| | ||| ||| || | | ||||||| || Sbjct 19053 TTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACG--TCTTCCAAGCCGGGACACTTGT 18996 Query 157344 TAGGACACATTAATGACCATATAC-CGTTTTCTTCAACGCGTTTCATAAATATATCGGGA 157402 |||||||| | ||||| || | | || |||| || || |||||||| | |||||| Sbjct 18995 GAGGACACAACAGCGACCA-ATCCTCATTGGCTTCCACACGCTTCATAAACAGATCGGGT 18937 Query 157403 ACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGC 157462 | ||| || |||| | | |||||| ||| || ||||| |||| |||| Sbjct 18936 ATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTG 18877 Query 157463 ATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCT 157522 | || || | || | || ||| ||||||| ||||| | ||| | || || ||| Sbjct 18876 AGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCT 18817 Query 157523 TTTCGCTT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATT 157579 ||||| |||||||||||| || | ||| ||| ||||||||| |||| ||||| Sbjct 18816 GGCCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACTCTGAGCATG 18757 Query 157580 GG 157581 || Sbjct 18756 GG 18755 >seq20348 Length=30608 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || || | |||||| |||||||| || ||||||||| | |||| | ||||| Sbjct 12901 ACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCC 12842 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||| || || ||| |||||| ||| || ||||| ||||| || ||||||||||| | Sbjct 12841 AATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGA 12782 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | || |||| ||||| || |||| ||| | ||||| Sbjct 12781 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 12722 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | ||||| ||||| |||||||| Sbjct 12721 CCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506847376781280