Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq19105 264 2e-65 seq19122 194 2e-44 seq25128 138 2e-27 seq24188 134 2e-26 >seq19105 Length=237168 Score = 264 bits (292), Expect = 2e-65 Identities = 568/837 (68%), Gaps = 34/837 (4%) Strand=Plus/Minus Query 125035 AAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACG 125094 || ||||| | || || || ||||| |||||||| || ||||||||||||||| || | Sbjct 37450 AACAGGCTGAAGCATCGTTCTGGACCGTCGAAGAAGTGGATCTGTCCAAGGACATGACTG 37391 Query 125095 ATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCT 125154 |||||| | | | || || | |||||| | || |||||||| | |||||||||| Sbjct 37390 ATTGGGCCAAGCTT---ACGGATAATGAGCGTCATTTCATATCGCATGTGTTGGCCTTCT 37334 Query 125155 TTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGA 125214 |||| | || |||||||| || ||||| |||||| | ||| || ||||| || Sbjct 37333 TTGCTGCTTCTGATGGAATTGTTAACGAAAATCTGGTCGAACGTTTTAGCCAAGAAGTGC 37274 Query 125215 CCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGG 125274 | | |||| |||||||| || ||||| || || ||||| ||||| || | Sbjct 37273 AGGTGACCGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTGCATTCCG 37214 Query 125275 AAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCT 125334 |||||||| | || ||||||| || || | ||||| || | | || |||| Sbjct 37213 AAATGTACAGTGTGCTCATTGACACCTATATCAGGGATCCTCATCAGCGAGACTATCTCT 37154 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAA---AAAGGCTCAATGGGTGATTCGGT 125391 | || || || || ||| ||||| || | ||| ||||| | |||| || | Sbjct 37153 TCAATGCCATTGAAACGATGCCGGCTGT---TAAGCGGAAGGCAGACTGGGCTCTTTCTT 37097 Query 125392 GGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTAG 125448 ||||| | || ||| || | || | || | | | || || || || || | Sbjct 37096 GGATCTCT-TCG--AAGGCTGCCAACTTTGGTGAACGTATTATTGCTTTTGCTGCTGTTG 37040 Query 125449 AGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCA 125508 | ||||||||||| || || ||||| ||||||| ||||| |||||||| ||||| | Sbjct 37039 AAGGCATCTTCTTCAGTGGGAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGGACTTA 36980 Query 125509 TGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACT 125568 |||| ||||| || | ||||| || || ||||| || || || || || ||||||| Sbjct 36979 TGCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGATGAAGGTCTGCATTGTGACT 36920 Query 125569 TTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGG 125628 |||| | || |||| |||| || || || | | | || | || ||| Sbjct 36919 TTGCGGTGCTTATGTT--CCAAC-ATTTG-GTGCAGCG-GC----CTAGTCGGGAACGCA 36869 Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688 |||| | || |||| ||||| |||| || || || ||||| || ||||| | || | Sbjct 36868 TCATTGAAATCATAACGGATGCTGTGACTATTGAGCAGGAGTTCCTCACCGATGCGCTGC 36809 Query 125689 CGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAG 125748 | |||| | |||||||||||||||| || |||| ||| || || |||||||| || | Sbjct 36808 CCGTCAACTTGATTGGCATGAACTGTGCTCTGATGTCCGAATATATCGAGTTTGTCGCTG 36749 Query 125749 ATCGTCTACTGTACGAGTTGA--TTGGC---CGCAAGATTTACAACGCCAAGAATCCCTT 125803 |||| ||| || ||||| ||||| |||||||||||||| | |||||||| || Sbjct 36748 ATCGCCTATTG-----GTTGAGCTTGGCGTGGGCAAGATTTACAACACAAAGAATCCATT 36694 Query 125804 TGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGT 125860 |||||| | || || | || || || |||||||| ||||||||||| || Sbjct 36693 CTCGTTCATGGAGATGATCTCTTTGGATGGCAAAACCAACTTCTTCGAGAAGAAAGT 36637 >seq19122 Length=505313 Score = 194 bits (214), Expect = 2e-44 Identities = 388/573 (68%), Gaps = 18/573 (3%) Strand=Plus/Minus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||||||| | |||||||| ||||| || ||||| | || || ||||| || || || || Sbjct 149719 TTTGCGGAAGAAGATGACACCGGCGCGTGGACCACGCAGCGTTTTGTGTGTGGTCGTTGT 149660 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT 127220 ||||||||| ||||||||| || || || | | | || | || || || | Sbjct 149659 CACAATGTCGGCATACTCAAACGGTGAGGGTATCTGCTCGGCAGCCACCAGACCGGCCAC 149600 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCG--GCA-ATCTCTCGGAATCG 127277 || || || ||||||||||| ||| ||| | |||| ||| |||| |||||||| Sbjct 149599 ATGCGCCATGTCGGCCATCAGATAGGCGCCAAC---ATCGTTGCAGATCTGACGGAATCG 149543 Query 127278 TCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAA 127337 ||| |||| || | |||||| | ||||||| ||||| | | ||| ||| Sbjct 149542 CGCATAATCCAGCAAACGCGAATAGCACGAGATGCCGGCAATGATGATCTGAGGGCGGAA 149483 Query 127338 TAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTT 127397 ||||| |||||| | ||| | ||||| | || || ||| ||||||||||| Sbjct 149482 AGTCTTGGCTGCCTCGGCCAACTTGTCGTAGTCAATGATGCCGGTCACGGGATCCACCTT 149423 Query 127398 GTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAA 127445 ||| |||||||| ||||| || | ||||| || || | || ||| ||| Sbjct 149422 GTAGGGCATGCTCTCGAAGAATATCGATGTGGCCGAGATCTTCTTGGTGGGCGTGAAGAA 149363 Query 127446 TCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTT 127505 |||||||||| ||||| || ||||||||||| | ||||| || | | |||| || Sbjct 149362 GCCGTGCGTCAAATGGCCGCCATCGGGCAGATCCAAGCCCATAATACGATCGTGGGGACG 149303 Query 127506 AACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACAC 127565 | || || ||||| |||| | ||||| || || ||||| || || ||| || Sbjct 149302 CAGGACGCCGGTGTAAGCGGCCAGATTGGCGGGGGAACCGGAGTAGGGCTGCACATTGAC 149243 Query 127566 TCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTC 127625 ||||||||| || || || |||||| | || | || | ||| || || |||| Sbjct 149242 GCCCCATTCGCTCTTGTCCAGATTGAAGAGTTCCAGGCCACGGTTCTGGGCCAGGCGTTC 149183 Query 127626 GATGCGATCGATAAACTCGTTACCACCATAGTA 127658 || ||||||| ||||||| ||||||||||| Sbjct 149182 AATCTGATCGATGTACTCGTTGCCACCATAGTA 149150 >seq25128 Length=30855 Score = 138 bits (152), Expect = 2e-27 Identities = 323/481 (67%), Gaps = 10/481 (2%) Strand=Plus/Plus Query 97782 AGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAAT 97841 |||||||| |||| ||||| || ||||||||||| | ||| |||| | | || ||| Sbjct 19715 AGAAACTCGCTGCTTGTGGCTCCAATGCCCACGGCATCTACTGCCCAGATCATGGGTAAT 19774 Query 97842 GCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAG 97901 ||| || ||||| |||| || |||||||| ||| || ||| ||| |||||| Sbjct 19775 AATGAGTCCTTTGAGCCGTATACTTCAAACATTTACACCAGGCGCGTTTTGTCCGGAGAG 19834 Query 97902 TTTCAAT-TGACCAACGTGCACTTGGTTCGAGACTTGGAACGG--CTCAATCTGTGGAAC 97958 || |||| || || || ||| | || || || ||| | || || | ||| | Sbjct 19835 TT-CAATGTGGTAAATCATCATTTGTTGCGGGATTT--AACCGAACTGGATTTATGGGAT 19891 Query 97959 GATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATC 98018 ||||||||| | ||||| || ||| ||||| |||||||| ||| Sbjct 19892 GATGACATGAAGAATCAAATCATTGCCAGTCGTGGCTCCATACAAAACATCGAATCCATT 19951 Query 98019 CCGGAAGAGTTGCGCAGAATCT--ACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGA 98076 || | || | || | |||| |||| || |||||||| || || ||| | | Sbjct 19952 CCTCAGGAAGTACG--GGATCTTTACAAAACCGTCTGGGAAATCTCGGTGAAGTCAACCA 20009 Query 98077 TCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACG 98136 || | ||||| || || | |||| | ||||||||||||||||| ||||| | ||| Sbjct 20010 TCAAGATGGCAGCTGATCGCGGTGCTTTTATTGACCAGAGTCAATCATTCAACATTCACG 20069 Query 98137 TTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCC 98196 ||||||| |||| |||| | | || || || || || | | | ||||| |||| Sbjct 20070 TTGCCGAACCCAACTACGGCAAGTTAACATCCATTCATTTCTTCTCGTGGAAGGCAGGCC 20129 Query 98197 TCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGG 98256 ||||||| || ||||| |||||| | |||||| | || ||||||| || | ||| || | Sbjct 20130 TCAAGACAGGAATGTATTATCTGCGCACAAAGCCAGCTGCCAATGCTATTCAATTCACAG 20189 Query 98257 T 98257 | Sbjct 20190 T 20190 >seq24188 Length=1289977 Score = 134 bits (148), Expect = 2e-26 Identities = 370/565 (65%), Gaps = 8/565 (1%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || |||||||| || || ||||| ||||||||| | || | || || ||||| | Sbjct 949992 GGGGATCTGGGTCCGGTCTACGGCTTCCAGTGGCGTCATTTTGGAGCCGAGTATCGCACC 950051 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTC 70186 ||||| ||||| || || || | ||||| ||||| | | ||||| || | Sbjct 950052 TGCGATGATGACTACAGCGGACAAGGCATCGATCAGCTGCAGCAAGTGATTGATACGATT 950111 Query 70187 AAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCAC 70246 | |||||| | ||| | | ||| | |||| | |||||||| ||| | | | Sbjct 950112 CGAAACAATCCCTCGGATCGTCGTATCATTATGTCGGCGTGGAATCCCTTGGATATACCC 950171 Query 70247 CAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTA----CGATGG 70299 |||||||||| || || || ||||| |||| ||||| || ||| | ||| || Sbjct 950172 AAAATGGCACTGCCTCCTTGCCACTGCTTGGTGCAGTTCTATGTGTCGCAATCTCGA-GG 950230 Query 70300 CAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAA 70359 || | || || |||| ||| | ||||| |||||||| ||||| || || ||||| Sbjct 950231 AGAACTCTCCTGTCATCTGTACCAGCGAAGTGCAGACATGGGACTCGGGGTTCCTTTTAA 950290 Query 70360 CATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCA 70419 ||| || ||| | || | || |||||||||| || | ||||| |||| | Sbjct 950291 CATCGCCTCTTATGCGCTGCTCACCTACATGATTGCCCATGTGACCGGATTGAAGCCTGG 950350 Query 70420 CGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAA 70479 || || || |||||||| || || |||| |||||| | ||||| | || ||||| | Sbjct 950351 TGACTTTGTCCACACCATGGGAGATTCTCATGTGTATCTTAATCATGTGGAACCATTGCA 950410 Query 70480 GGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGA 70539 |||||| | ||| |||| | | ||||| ||||| | || || | || Sbjct 950411 ACAGCAACTAAAGCGGCAGCCTCGTTCATTTCCTAAGCTTAACATTAAGCGGCAGGTCAC 950470 Query 70540 AAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAA 70599 ||||||||| ||| || ||||||||| ||| || ||| |||| | || Sbjct 950471 AAATATTGAAGACTTTCGTTATGAAGATTTTGAAATCGTTGGATACAATCCTCATGAAAA 950530 Query 70600 GATTCCCATGGTTCTGGCTGTTTAG 70624 ||||| |||| ||||||||||| Sbjct 950531 GATTCAAATGGAGATGGCTGTTTAG 950555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740815076573040