Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq6700 113 2e-20 seq23306 105 2e-18 >seq6700 Length=1378 Score = 113 bits (124), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 8/153 (5%) Strand=Plus/Minus Query 53051 CCTGACCAGCTGTGGGTGGCTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTAT 53110 ||| || ||| ||||| | ||||||||||| || ||| |||| |||||| || ||| Sbjct 619 CCTAACAGGCTCTGGGTTTCGGATTTTACTTATGTTTCCACTTGGCTGGGCTTTGTTTAT 560 Query 53111 GTGGCGTTCATCATTGATGTGTTTGCCGGATACATTGTGGGGTGGCGGGTCTCATC---- 53166 || || ||||||||||||||||||||| | ||||||||| ||||| |||||||| Sbjct 559 GTAGCCTTCATCATTGATGTGTTTGCCCGGGTCATTGTGGGCTGGCGTGTCTCATCAACG 500 Query 53167 GTCCATGGAGACGACATTCGTGCTGGATGCACT 53199 | |||| ||| |||||||||||||| || Sbjct 499 GCCCATACCGAC----TTCGTGCTGGATGCCCT 471 Score = 91.5 bits (100), Expect = 5e-14 Identities = 106/141 (75%), Gaps = 8/141 (6%) Strand=Plus/Minus Query 50223 TGGGTGGCTGATTTTACCTGGGTAAGCACATGGCAGGGCTTCGTTTATGTGGCGTTCATC 50282 ||||| | |||||||| | || ||| |||| |||||| |||||||| || |||||| Sbjct 607 TGGGTTTCGGATTTTACTTATGTTTCCACTTGGCTGGGCTTTGTTTATGTAGCCTTCATC 548 Query 50283 ATTGATGTGTTCGCCGGATACATCGTGGGATGGCAGGTCTCATCA----TCCATGGAAAC 50338 ||||||||||| ||| | ||| ||||| |||| ||||||||| |||| | | Sbjct 547 ATTGATGTGTTTGCCCGGGTCATTGTGGGCTGGCGTGTCTCATCAACGGCCCAT---ACC 491 Query 50339 AACATTCGTGCTGGATGCACT 50359 || |||||||||||||| || Sbjct 490 GAC-TTCGTGCTGGATGCCCT 471 >seq23306 Length=1609 Score = 105 bits (116), Expect = 2e-18 Identities = 283/429 (66%), Gaps = 4/429 (1%) Strand=Plus/Minus Query 28437 aaaaaaaaCAGCAAGTCCACGCTGGCTGCCGGGATCATGATGACGGCGCTGTTACTGAAC 28496 || || |||| ||| || || | || ||||| | ||| | || | |||| | |||||| Sbjct 1052 AAGAAGAACACCAAATCGACCATCGCGGCCGGCGTGATGCTCACAGTGCTGATCCTGAAC 993 Query 28497 TGGCGGCAGGCGGCGGGCTACACCATTCTGGCCCCGACTGTGGAGGTGGCGGCTAACGCC 28556 ||||||||| | || | | | |||||||| || || |||| || | |||||| Sbjct 992 TGGCGGCAGTCTGCTGAGTTCCTAATTCTGGCACCCACGAAAGAGGCCGCCGACAACGCC 933 Query 28557 TTTAATCCTGCGCGGGATATGGTCAGACGTGACGATGATCTGGATGACCTCTGCCAGGTG 28616 || || || || || || ||| || | ||| ||||| || | ||| | || ||| Sbjct 932 TTCAAGCCCGCCCGTGACATGATCCGGGCTGATCCGGATCTTGAAGCCCTGTTTCATGTG 873 Query 28617 CAG-AC-ACATATCCGGACCATCACCCACAGGGTGACGGACACTACCCTTAAGGTGGTGG 28674 ||| || ||| | || | ||| || ||| | | || | | || | | || || | Sbjct 872 CAGGACTACAGA--CGCATCATTACGCACCGCGAAACCGGAGCGACATTGAGTGTCGTAG 815 Query 28675 CAGCCGATCCGAATACGGTGTCCGGTATCAAGTCCGTGGGGACACTGATTGATGAACTGT 28734 |||| ||| | | ||| ||| | || || || | ||| | |||||||||| Sbjct 814 CAGCGGATGGCTCTTCCGTGGTCGGGAAAAAAGCCACCGGTATTCTGGTGGATGAACTGT 755 Query 28735 GGCTGTTTGGCAAGCAGTACAAAGCGGAAGACATGTTACGTGAAGCCATCGGCGGGCTTG 28794 || ||| || ||| || ||||||| ||||| | ||||| | ||||| ||| Sbjct 754 GGGAGTTCGGGAAGAAGCCAGCAGCGGAAAACATGCTGATGGAAGCGACGGGCGGTATTG 695 Query 28795 CCTCCCGTCCGGAAGGATTTGTGGTGTACACAACCACCCAGTCGAATGAGCCGCCAGCCG 28854 || | ||||||||||| || ||| | ||| | ||| ||| || |||| ||| |||| Sbjct 694 CCGCGCGTCCGGAAGGGTTCGTGATCTACCTCAGCACACAGGCGGATGAAGAGCCTGCCG 635 Query 28855 GGGTGTTCA 28863 ||||||||| Sbjct 634 GGGTGTTCA 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185196423940816