Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq20348 163 7e-35 seq16702 134 3e-26 seq25099 116 9e-21 seq19105 114 3e-20 seq14047 89.7 1e-12 >seq20348 Length=30608 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || |||||||| ||||| || ||||| || || || ||||| | || ||||| | ||| Sbjct 12895 TGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGC 12836 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || | | ||||||||| ||||| ||||||||||| ||||||||||| Sbjct 12835 TTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 12776 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | |||||| ||||| ||||| || || || |||||||| || Sbjct 12775 GCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTG 12716 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| Sbjct 12715 AGGGTTTTAACGAAGATTTGCAT 12693 >seq16702 Length=433992 Score = 134 bits (148), Expect = 3e-26 Identities = 193/267 (72%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 238626 GGCAAAATGCATAG-TTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAG 238684 |||||||||||| | ||||| | ||||||||||||| || ||||||||||||||||| Sbjct 196529 GGCAAAATGCATGGATTTCTGA-GAATGTATTGGGCCAAGAAGATACTTGAATGGACAGA 196587 Query 238685 ATCTCCAAAGGAAGCTCTTAGA-TATAGTATTTATCTGAACGATAAATACGAACTCGACG 238743 | | ||| || | || || || ||||| || | |||||||| |||||| || || | Sbjct 196588 AACACCAGAGCAGGC-GTTGGAGTATAGCATATTGCTGAACGACAAATACAGTCTGGATG 196646 Query 238744 GTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGG 238803 | ||||| || || || || || || |||||||| | | || | || |||| | Sbjct 196647 GCCGTGATCCCAATGGTTATGTGGGCTGCATGTGGTCTGTCGGGGGTATCCATGATAACG 196706 Query 238804 CATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGA 238863 ||||| ||| | | ||||| || || || | || ||||| ||| ||||| ||| Sbjct 196707 CATGGAAGGAGCGTGCCATATTCGGCAAGATTCGCTATATGAACTATCAAGGATGTAAAC 196766 Query 238864 AAAAATTTGATGTAAATGCTTTTATCA 238890 |||||||||||| ||||| ||| ||| Sbjct 196767 GAAAATTTGATGTTAATGCATTTGTCA 196793 >seq25099 Length=83779 Score = 116 bits (128), Expect = 9e-21 Identities = 133/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| ||||| ||||| || || | ||| || || || || || || Sbjct 21221 GTCGACTCTTTCTGAATGTTATAATCAGAAAGGGTGCGACCATCCTCCAGCTGCTTGCCG 21280 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGC--TT 104480 || || || || | ||| ||||| ||||| |||||||| ||||| || ||||| || | Sbjct 21281 GCGAAGATGAGACGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGGATCTTGGCCNCT 21340 Query 104481 TTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 | ||||| || | |||||| ||||||||| || || || || ||||| || || || Sbjct 21341 TCACATTCTCAATGGTATCAGAAGGTTCTACTTCCAGGGTGATGGTCTTTCCGGTCAG 21398 >seq19105 Length=237168 Score = 114 bits (126), Expect = 3e-20 Identities = 363/551 (66%), Gaps = 35/551 (6%) Strand=Plus/Minus Query 268749 AACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAG 268808 ||||||| | || || || ||||| || |||||||| |||||||| | ||| | | | Sbjct 37450 AACAGGCTGAAGCATCGTTCTGGACCGTCGAAGAAGTGGATCTGTCCAAGGACATGACTG 37391 Query 268809 ATTGGAAAAATTTAAAACCAGAAGAAAGAAG---ATTT-ATATCTTATATTCTTGCGTTT 268864 ||||| || | | | | || || |||| ||||| || | | || || Sbjct 37390 ATTGGGCCAAGCTTAC----GGATAATGAGCGTCATTTCATATCGCATGTGTTGGCCTTC 37335 Query 268865 TTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT-GTCAAGAGGT 268923 ||||| | | |||||| || |||||||||||||| || || | ||| | | ||||| || Sbjct 37334 TTTGCTGCTTCTGATGGAATTGTTAACGAAAATCTGGTCGA-ACGTTTTAGCCAAGAAGT 37276 Query 268924 ACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTC 268983 ||| | | || || | || ||||| || |||||||| || || || ||| | ||||| Sbjct 37275 GCAGGTGACCGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTGCATTC 37216 Query 268984 AGAGATGTACAGTCTATTAATAGATACTTATATAGATGAT----AACAACGAAAAGAAAA 269039 || ||||||||| | | || || || ||||| ||| | || ||| Sbjct 37215 CGAAATGTACAGTGTGCTCATTGACACCTATATCAGGGATCCTCATCAGCGA-------- 37164 Query 269040 GACTATTTTCTTCTATGAGA-----ACTATG--GACTGTGTGAGaaaaaaaTCTGAATGG 269092 |||||| | |||| ||| | || ||| | |||| | || || | || ||| Sbjct 37163 GACTATCT-CTTCAATGCCATTGAAACGATGCCGGCTGT-TAAGCGGAAGG-CAGACTGG 37107 Query 269093 GCTCTGAAATGGATAAA--CGATAGC-GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCC 269149 ||||| ||||| ||| || || | || ||| | | |||||||||| Sbjct 37106 GCTCTTTCTTGGATCTCTTCGAAGGCTGCCAACTTTGGTGAACGTATTATTGCTTTTGCT 37047 Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209 ||||| ||||| || ||||| ||| ||||| | ||||| ||| ||||||| | Sbjct 37046 GCTGTTGAAGGCATCTTCTTCAGTGGGAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGT 36987 Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269 || |||||||| ||| | || ||||| ||||||||||| | || |||||| | || Sbjct 36986 GGACTTATGCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGATGAAGGTCTGCAT 36927 Query 269270 TGCGACTTCGC 269280 || ||||| || Sbjct 36926 TGTGACTTTGC 36916 >seq14047 Length=15719 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| ||||| || |||||||| || || || ||||| | ||| || || || || || || Sbjct 15668 TGTCGATTCCTTTTGAATATTGTAATCTGAAAGAGTGCGACCATCCTCCAGCTGCTTGCC 15609 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 || || || || | ||| ||||| || || ||||||||||| || || ||||| || || Sbjct 15608 GGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGGATCTTGGCCTT 15549 Query 104482 TACATTTTC 104490 ||||| || Sbjct 15548 CACATTCTC 15540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151009618096632