Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq17959 87.8 2e-12 >seq17959 Length=3161164 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 5315 ATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTT 5374 ||||||||||| || | || || || | || || ||| ||||| || ||| | | Sbjct 1621285 ATGCGTTCGCAAATGAATTGGGCAATGCGATCACCACGCTTCACCTCGAAATCG--GCAT 1621342 Query 5375 CCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAG 5432 |||| || |||||||| || || | |||||| || ||||| || || | |||||| | Sbjct 1621343 CCGAGTGATTGAACAGCACAACACCCAGATTGCCGCGATAGTCCTCATCCACAACGCCGG 1621402 Query 5433 CGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGC 5492 | ||||||||||| |||| || || || | ||| || ||||| || | || || ||| Sbjct 1621403 CTCCCACGTCGATGAAGTTCTTCACAGCCAAGCCAGAGCGTGGCGCCACACGGCCATAGG 1621462 Query 5493 AACC 5496 |||| Sbjct 1621463 AACC 1621466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447602899824480