Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq17959 123 2e-23 >seq17959 Length=3161164 Score = 123 bits (136), Expect = 2e-23 Identities = 204/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 || ||||| || || || || || |||| | | | || || ||||| | |||| Sbjct 1621207 ACACCCGTTGAGCCAAAGCCACCCTCGCCGCGTACTGTGTCCTCCAGTTTGTCGACCTGC 1621266 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 |||| ||||| | | || ||| ||||| || | || || || || || || ||| Sbjct 1621267 TCCAGCTCGGGATA-GAAGATGCGTTCGCAAATGAATTGGGCAATGCGATCACCACGCTT 1621325 Query 5620 TACCTCGAAATCGTTGTGGCCGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 |||||||||||| | |||| ||||||||||| || |||| |||||||| ||| Sbjct 1621326 CACCTCGAAATCGGCAT--CCGAGTGATTGAACAGCACAACACCCAGATTGCCGCGATAG 1621383 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || | || | ||||| || |||||||||||||||| ||| || |||| ||| ||||| Sbjct 1621384 TCCTCATCCACAACGCCGGCTCCCACGTCGATGAAGTTCTTCACAGCCAAGCCAGAGCGT 1621443 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || ||||| ||||| ||| | || || || | || | |||||| || || Sbjct 1621444 GGCGCCACACGGCCATAGGAACCCTCTGGCACTTGGACCTGCAGATCTGT 1621493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429916271096048