Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq24486 127 2e-24 seq20348 122 8e-23 seq14047 82.4 7e-11 >seq24486 Length=213816 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||||||||| || || ||||| || | ||| || ||| || |||| | | Sbjct 88359 CGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA 88300 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | ||||| | | || |||||||| ||||| || || ||| Sbjct 88299 TCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGAATTCCCTCCTTG 88240 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| ||||||| | | || || || | |||||| Sbjct 88239 TCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACCTCCAAGGTGATG 88180 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | |||||||| ||||| ||||| Sbjct 88179 GTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCAT 88145 >seq20348 Length=30608 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||||||||| ||||| || ||||| | || |||||| | |||| ||| || Sbjct 12902 CACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTC 12843 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || ||| ||||||| || | || |||||||||||||| ||||||||||| | Sbjct 12842 CAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTG 12783 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || || ||||| ||| || || | | ||||| |||| |||||||| || Sbjct 12782 AATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 12723 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || ||||| ||||| Sbjct 12722 ACCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 >seq14047 Length=15719 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | || ||||||||||| | || ||||| | | || || || ||||| Sbjct 15679 ACCAAGTGAAGTGTCGATTCCTTTTGAATATTGTAATC--TGAAAGAGTGCGACCATCCT 15622 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| || ||| | ||||| | | ||||||||||| || || ||||||||||| | Sbjct 15621 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCTTCTTTGTCTT 15562 Query 94917 AAATTTTTGCCTTGAC 94932 || || ||||| || Sbjct 15561 GGATCTTGGCCTTCAC 15546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448143521671440