Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq25128 462 3e-125 seq19105 284 2e-71 >seq25128 Length=30855 Score = 462 bits (512), Expect = 3e-125 Identities = 1240/1882 (66%), Gaps = 28/1882 (1%) Strand=Plus/Minus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 |||| | |||||||||||| | | || || || || || || ||||| |||||||| Sbjct 20196 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCT 20137 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 || || || || |||| | | ||||| || |||| ||| || | || Sbjct 20136 GTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGGT 20077 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || || | || || || | |||||||| || || || || || || | || || ||| Sbjct 20076 TCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCC 20017 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62224 || || ||| | | ||| | |||||||| | ||||| |||| || | || | || Sbjct 20016 ATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACT-TC 19958 Query 62225 TTCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62281 | |||| | || | | || || ||||| |||| | || || || |||||| || Sbjct 19957 CTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCAT 19898 Query 62282 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62341 ||||||| |||||| | ||||||||| | | | | ||| |||| || || | Sbjct 19897 GTCATCATCCCATAAATCCAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATT 19838 Query 62342 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62401 || ||||| ||||| || | || |||||||| || |||||||| || | ||||| Sbjct 19837 GAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTC 19778 Query 62402 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-T 62460 |||||| |||| || || ||||| ||||| || ||||| || ||||| || | | | | Sbjct 19777 ATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCCAC-AAGCAGCGAGT 19719 Query 62461 TTCTAAGACCGTATGTTCT--GATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 62518 |||||| || ||| ||| |||||| |||||||| ||||| |||||| | | Sbjct 19718 TTCTAACGCC--ATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGTTTGT 19661 Query 62519 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 62577 ||| || ||||| || || || | | || | || | | Sbjct 19660 GGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAA-CCAGCGT 19602 Query 62578 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62637 | || || || || || ||||| | ||| || |||||||| ||||| | ||||| || | Sbjct 19601 AGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGT 19542 Query 62638 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 62697 | |||||||||||||||| || ||| || | |||| || ||| | ||| | Sbjct 19541 AGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAGC 19482 Query 62698 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62757 | ||||| || ||||| || || || ||||| ||||| || || || | |||||| Sbjct 19481 GCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTA 19422 Query 62758 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62817 ||| || | | || || || | ||||| ||||| ||||| || ||||| || | || Sbjct 19421 AATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAAT 19362 Query 62818 TTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA 62874 ||||| ||| || || || ||||| ||||| ||||| ||| ||| Sbjct 19361 TTCTGGTGACAGTT---TTAGTAACTTCCTTTAGTTTCTTGAAATCGAATGTTTTCTCTG 19305 Query 62875 ---TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62931 | |||||||| |||||||| | ||||||| ||| || ||||| | ||||| | Sbjct 19304 AAGTCACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTG 19245 Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991 ||| ||||| | || || ||||| || || || || ||||| || || | ||| || | Sbjct 19244 CCGAATATTCAACAATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCT 19185 Query 62992 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63051 |||| ||||| |||| || | || || | || ||| | ||||| ||||| |||| | Sbjct 19184 GATTGCTCTTCCTGTTGCAAGAGTCTTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTT 19125 Query 63052 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTT 63110 ||||||| | ||| || | ||| | | | || || || | | |||||| || | Sbjct 19124 GAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTGCGCGACCCT 19065 Query 63111 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170 | || || || |||||||| || || || || |||||||| | ||||| || Sbjct 19064 -CGCTCTCATACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCG 19006 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230 ||||| | | ||||||| || |||||| || | | | | ||| || |||||||| Sbjct 19005 GGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCTTCCACACGCTTCATAAAC 18946 Query 63231 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63290 ||||| || ||||| | || || ||||| | | ||| || || || || || || Sbjct 18945 AGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTG 18886 Query 63291 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63350 |||||||| || || | |||| | | ||||| |||||||| ||||||| ||| ||||| Sbjct 18885 TTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCA 18826 Query 63351 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63410 | | | || ||||| ||| || || ||||| | || | ||| |||||| | ||| Sbjct 18825 AAAGCGCCTGGCCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACT 18766 Query 63411 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTG 63470 || | ||| || | | ||| ||||| | ||||| || || |||| || | || || Sbjct 18765 CTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTG 18706 Query 63471 GCACGAATATTA--CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63528 ||||||||| | | ||||| | || || || || || ||| ||||| | ||| | Sbjct 18705 GCACGAATACAATGCACATTGA--GTCCAATGCCACCAGCGGATTTGGAGATCATTGCAC 18648 Query 63529 ATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63588 | | | | | | | || || || ||| ||| | ||| | || || |||| Sbjct 18647 ACTGCTCGACGGACTTGAAAATGCCTTCGATGGAATCGGAAACCATTGTTAGAAGGAAAC 18588 Query 63589 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648 | ||||| ||| ||||| | || | ||| ||||| || || || || ||||||| Sbjct 18587 ACGATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAGCGTTGGCGATGCATGCGTAA 18528 Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63708 | | ||| || | |||||||| ||||| | ||| || || || || ||| | Sbjct 18527 AATAGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCATGGA 18468 Query 63709 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63768 |||| | || || | ||| | ||||||||| || | ||| |||| ||| || || | Sbjct 18467 TTCCAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGATCT 18408 Query 63769 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63828 | | ||| || || || | || || || |||||||||||||| ||| || || | Sbjct 18407 TTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCACGAT 18348 Query 63829 CGTAAATAATAACCGAGTTGAG 63850 | || || || | ||||| || Sbjct 18347 CATAGATGATCGCTGAGTTCAG 18326 >seq19105 Length=237168 Score = 284 bits (314), Expect = 2e-71 Identities = 573/844 (68%), Gaps = 11/844 (1%) Strand=Plus/Plus Query 33002 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCA 33061 |||||||||| || ||||||||||| || ||||| || || ||||| || |||| Sbjct 36611 TAACTCCCATGCGCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCA 36670 Query 33062 ATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA 33121 | || || | |||||||| || ||||| | || ||||| || | || | Sbjct 36671 AAGAGATCATCTCCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACGCCAA 36730 Query 33122 ATTCAGAAATCAAT---CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33178 ||| | |||| | ||| ||||| || || |||||| ||||| |||| | Sbjct 36731 GCTCA---ACCAATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGT 36787 Query 33179 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 33238 |||| || || | || || || || || | || || || || || ||||| | || | Sbjct 36788 TCATGCCAATCAAGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAG 36847 Query 33239 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 33298 |||| ||||| || | | | ||| ||| || | |||| ||||||| |||| Sbjct 36848 CATCCGTTATGATTTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACA 36907 Query 33299 TCAAACAT-GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 | || || || || || || |||||||| || || | | || | ||||||||| || Sbjct 36908 T-AAGCACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAAT 36966 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || ||||| ||||| || |||||||| || ||||| || ||||| || || ||| Sbjct 36967 GTAAGTCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTG 37026 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC 33476 |||||||| ||||| || |||||||| ||||||| | || ||| | ||| || || Sbjct 37027 AAGAAGATGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTC 37086 Query 33477 --ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 | ||||| ||||||| || |||||| || ||| ||||||||||| ||| Sbjct 37087 GAAGAGATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATG 37146 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 ||||| |||||||||| | | || | ||| | | ||| || || || | | ||| Sbjct 37147 GCATTGAAGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTG 37206 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 |||||||| ||||| | || || ||||| ||||| || || || || || | |||||| Sbjct 37207 TACATTTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCG 37266 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 || | ||| |||||| | ||| ||||| ||| |||||| || || ||||| ||| Sbjct 37267 GTCACCTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAA 37326 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33774 || ||||| || ||||| ||||| ||| |||| || | || || || | Sbjct 37327 GCAGCAAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCC 37386 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 |||||| | || || || || | ||| |||||||| || ||||| || ||||| || ||| Sbjct 37387 CAATCAGTCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCC 37446 Query 33835 TTTT 33838 | || Sbjct 37447 TGTT 37450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622741985618640