Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq23306 170 5e-38 seq3629 149 2e-31 >seq23306 Length=1609 Score = 170 bits (188), Expect = 5e-38 Identities = 255/362 (70%), Gaps = 0/362 (0%) Strand=Plus/Plus Query 43823 TCGGCCGCAACCACCTTCAACGACGCTCGACTGACGCGGTGCGTTATCGTGCGGATGTGA 43882 || || || || || |||| | ||||| | |||||||||| || |||| ||| Sbjct 808 TCCGCTGCTACGACACTCAATGTCGCTCCGGTTTCGCGGTGCGTAATGATGCGTCTGTAG 867 Query 43883 TCTTGGACATGAAACAGCTCGGACAGCTCTGCATCGGCCCGGATCATCCCCGCCGCCGGT 43942 || || ||||||||||| | || || | ||| ||||||||||| | || || Sbjct 868 TCCTGCACATGAAACAGGGCTTCAAGATCCGGATCAGCCCGGATCATGTCACGGGCGGGC 927 Query 43943 TTGAAGCTGTTGTCCGCGACCTCCTTCGTCGGGGCGAGAATCAGGTGCTCTTCTTCCTCG 44002 |||||| |||||| ||| |||| ||||| || || ||||| ||| ||| | || Sbjct 928 TTGAAGGCGTTGTCGGCGGCCTCTTTCGTGGGTGCCAGAATTAGGAACTCAGCAGACTGC 987 Query 44003 CGCCAACACAAAATGACCGCCGTCAGCATGATTCCGGCCGCGATCGTCGATTTCGTATTC 44062 ||||| || || | | | || ||||| | ||||||||||| |||||||| || ||| Sbjct 988 CGCCAGTTCAGGATCAGCACTGTGAGCATCACGCCGGCCGCGATGGTCGATTTGGTGTTC 1047 Query 44063 TTCTTGCTGATCAGCAGAAAGAACTCGCGGATCAGTTGCTTGCCGGTTTCGGCATCGTAG 44122 |||||||||| |||||| |||||||| ||||| || ||||||| || | || ||| Sbjct 1048 TTCTTGCTGACCAGCAGGAAGAACTCTGTAATCAGGCGCGTGCCGGTATCCGGGTCATAG 1107 Query 44123 GCACCGAAAATGGCCGCGACGAAATCGAAGACCCACTGCTCGCTGCATTCGCCGAAGGTC 44182 | ||||||||| |||| |||| || | ||| | | || | | ||||||| |||| Sbjct 1108 GAACCGAAAATCGCCGAAGCGAAGTCCTTCAGCCAGTCCCGGCAGGACTCGCCGATGGTC 1167 Query 44183 GG 44184 || Sbjct 1168 GG 1169 >seq3629 Length=7637 Score = 149 bits (164), Expect = 2e-31 Identities = 214/302 (71%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 43883 TCTTGGACATGAAACAGCTCGGACAGCTCTGCATCGGCCCGGATCATCCCCGCCGCCGGT 43942 || || ||||||||||| | || || | ||| ||||||||||| | || || Sbjct 5805 TCCTGCACATGAAACAGGGCTTCAAGATCCGGATCAGCCCGGATCATGTCACGGGCGGGC 5864 Query 43943 TTGAAGCTGTTGTCCGCGACCTCCTTCGTCGGGGCGAGAATCAGGTGCTCTTCTTCCTCG 44002 ||||| |||||| ||| |||| ||||| || || ||||||||| ||| | || Sbjct 5865 TTGAACGCGTTGTCGGCGGCCTCTTTCGTGGGTGCCAGAATCAGGAACTCAGCAGACTGC 5924 Query 44003 CGCCAACACAAAATGACCGCCGTCAGCATGATTCCGGCCGCGATCGTCGATTTCGTATTC 44062 ||||| || || | | |||| ||||| | ||||||||||| |||||||| || ||| Sbjct 5925 CGCCAGTTCAGGATCAGCACCGTGAGCATCACGCCGGCCGCGATGGTCGATTTGGTGTTC 5984 Query 44063 TTCTTGCTGATCAGCAGAAAGAACTCGCGGATCAGTTGCTTGCCGGTTTCGGCATCGTAG 44122 |||||||||| |||||| ||||| || |||||| | ||| || || | |||||| Sbjct 5985 TTCTTGCTGACCAGCAGGAAGAATTCCGTGATCAGCCGGACGCCTGTATCTGGATCGTAA 6044 Query 44123 GCACCGAAAATGGCCGCGACGAAATCGAAGACCCACTGCTCGCTGCATTCGCCGAAGGTC 44182 | |||||||| ||||| |||| || | ||| | | || | |||| |||| |||| Sbjct 6045 GACCCGAAAATCGCCGCAGCGAAGTCCTTCAGCCAGTCCCGGCAGGATTCCCCGATGGTC 6104 Query 44183 GG 44184 || Sbjct 6105 GG 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143372716924264