Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq17337 150 1e-31 seq13303 150 1e-31 seq20348 95.1 8e-15 seq24486 89.7 3e-13 >seq17337 Length=177336 Score = 150 bits (166), Expect = 1e-31 Identities = 163/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| |||| | || || ||||| | || ||||| ||||| |||||||| |||||| Sbjct 59246 ATGGCGACCGTCAATGTGAATCGCAGCGTTACGGACATCTTCTATCGCTACAAGATGCCG 59187 Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279 || ||||| |||||||| ||||| ||||| || || || || |||||| | ||||||| Sbjct 59186 CG--TCTGCAGGCCAAGGTTGAGGGCAAGGGCAATGGCATCAAGACCGTCCTGGTCAACA 59129 Query 6280 TGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339 || | || || || || |||| ||||| |||||||| ||||| || || || || | Sbjct 59128 TGGCCGAGGTGGCGCGTGCTATCGGCCGCCCGGCCACCTATCCGACCAAGTACTTTGGTT 59069 Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 ||||| | || |||||||||||||| ||||| || Sbjct 59068 GCGAATTGGGTGCTCAGACGCAGTTCGATCATAA 59035 Score = 122 bits (134), Expect = 6e-23 Identities = 173/238 (73%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 6369 CACA-ANAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC-CAAGCTGCAGGACT 6426 |||| | || || |||||||| || || || |||||| | | || |||||||||||| Sbjct 58737 CACACAGAATGAACGCTTCATTGTGAATGGCTCGCATGA-TGTGAACAAGCTGCAGGATC 58679 Query 6427 TACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 | || || ||||| || ||||| ||||||||||| | ||||||||||| ||||| ||| Sbjct 58678 TGCTCGATGGCTTCATACGCAAATTTGTGCTGTGCCCCGAATGCGATAATCCGGAAACCA 58619 Query 6487 AGCTTATTGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACC 6546 | | | ||| || |||||| | ||||| || || ||||| || ||||||| || Sbjct 58618 ACTTGACTGTCTCGGCCAAGAATCAAACCATTTCGCAATCGTGCAAGGCTTGCGGTTTCC 58559 Query 6547 ATGGCAAGCT--GGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 ||||| ||| | || || || || | ||||| | ||| |||||||||| ||| Sbjct 58558 ATGGCCTGCTCAAGGTTAAT--CATAAGGTGAACACGTACATTGTGAAGAATCCACCA 58503 >seq13303 Length=10452 Score = 150 bits (166), Expect = 1e-31 Identities = 163/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| |||| | || || ||||| | || ||||| ||||| |||||||| |||||| Sbjct 9644 ATGGCGACCGTCAATGTGAATCGCAGCGTTACGGACATCTTCTATCGCTACAAGATGCCG 9585 Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279 || ||||| |||||||| ||||| ||||| || || || || |||||| | ||||||| Sbjct 9584 CG--TCTGCAGGCCAAGGTTGAGGGCAAGGGCAATGGCATCAAGACCGTCCTGGTCAACA 9527 Query 6280 TGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339 || | || || || || |||| ||||| |||||||| ||||| || || || || | Sbjct 9526 TGGCCGAGGTGGCGCGTGCTATCGGCCGCCCGGCCACCTATCCGACCAAGTACTTTGGTT 9467 Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 ||||| | || |||||||||||||| ||||| || Sbjct 9466 GCGAATTGGGTGCTCAGACGCAGTTCGATCATAA 9433 Score = 122 bits (134), Expect = 6e-23 Identities = 173/238 (73%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 6369 CACA-ANAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC-CAAGCTGCAGGACT 6426 |||| | || || |||||||| || || || |||||| | | || |||||||||||| Sbjct 9119 CACACAGAATGAACGCTTCATTGTGAATGGCTCGCATGA-TGTGAACAAGCTGCAGGATC 9061 Query 6427 TACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 | || || ||||| || ||||| ||||||||||| | ||||||||||| ||||| ||| Sbjct 9060 TGCTCGATGGCTTCATACGCAAATTTGTGCTGTGCCCCGAATGCGATAATCCGGAAACCA 9001 Query 6487 AGCTTATTGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACC 6546 | | | ||| || |||||| | ||||| || || ||||| || ||||||| || Sbjct 9000 ACTTGACTGTCTCGGCCAAGAATCAAACCATTTCGCAATCGTGCAAGGCTTGCGGTTTCC 8941 Query 6547 ATGGCAAGCT--GGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 ||||| ||| | || || || || | ||||| | ||| |||||||||| ||| Sbjct 8940 ATGGCCTGCTCAAGGTTAAT--CATAAGGTGAACACGTACATTGTGAAGAATCCACCA 8885 >seq20348 Length=30608 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | || | |||||| || | || ||| ||||| ||||||||||| || Sbjct 12920 ACCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGA 12861 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | || | || || ||||| || |||||||| || | || |||||||| | || Sbjct 12860 AAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGG 12801 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAA 38268 | |||||||||||| ||| || || ||||| | || ||||| | || ||| | Sbjct 12800 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATC-CGACGGTTCGA 12742 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || |||||||| | |||||| ||||| || ||||| Sbjct 12741 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 >seq24486 Length=213816 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||||| |||||| || | || |||||| || || ||||| || | Sbjct 88373 TACCACCACGCAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGG 88314 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | || | || || | || || || || || || || || |||||||| | || Sbjct 88313 ACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGG 88254 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| || || ||| ||||||| || || || || | Sbjct 88253 GAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCA 88194 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || || || || || || ||||||||||||||||| || ||||| || Sbjct 88193 CCTCCAAGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCATTTT 88142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334839618518174