Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq20348 132 4e-26 seq16702 107 2e-18 seq14047 84.2 2e-11 >seq20348 Length=30608 Score = 132 bits (146), Expect = 4e-26 Identities = 162/219 (74%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| || || || || | || ||||| ||||||| | || || || || Sbjct 12690 ACGATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCG 12749 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 || || || ||||| |||| |||| || | ||| ||||||||||| ||||| || Sbjct 12750 TCGGATACCATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCC 12805 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || |||||||| | || ||||||||||| ||||| ||||||| |||||| | ||| Sbjct 12806 AGATCAACAGCGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGA 12865 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| |||||||| || || | || || ||||| Sbjct 12866 TTACAATATCCAAAAAGAGTCTACATTGCACTTGGTGCT 12904 >seq16702 Length=433992 Score = 107 bits (118), Expect = 2e-18 Identities = 199/290 (69%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 50988 AAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTC 51047 ||| || || ||||| || ||||||||||| | || |||| || || || || Sbjct 196774 AAATTTTCGTTTACATCCTTGATAGTTCATATAGCGAATCTTGCCGAATATGGCACGCTC 196715 Query 51048 TTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGG 51107 || | | | || || | ||| | | |||||||| || ||||||||| || || Sbjct 196714 CTTCCATGCGTTATCATGGATACCCCCGACAGACCACATGCAGCCCACATAACCATTGGG 196655 Query 51108 ATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTC 51167 ||| || ||||||| ||||| | ||||| || |||||| ||| |||| ||| || Sbjct 196654 ATCACGGCCATCCAGACTGTATTTGTCGTTCAGCAATATGCTATACTCCAACGCCTGCTC 196595 Query 51168 TGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCAT 51227 || | |||||||| | || ||||||||||| ||||| | || | || ||||| Sbjct 196594 TGGTGTTTCTGTCCATTCAAGTATCTTCTTGGCCCAATACATTCTCAGAAATCCATGCAT 196535 Query 51228 CTTGCCCTCGCAACGA--AGCTGCGCTTGAGCCGAGTTCCACAATTCGTC 51275 |||||||| | || |||||| ||| ||||||||||| | ||||| Sbjct 196534 TTTGCCCTC--ATTGACCAGCTGCAATTGCGCCGAGTTCCAAAGGTCGTC 196487 >seq14047 Length=15719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| || || || || || ||||| | || || |||||||| || | || Sbjct 15564 GACAAAGAAGGAATCCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAG 15623 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||||||| | ||||||||||||||||| ||||| || || || || || || Sbjct 15624 GATGGTCGCACTCTTTCAGATTACAATATTCAAAAGGAATCGACACTTCACTTGGTCCT 15682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433188819650510