Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq19105 322 5e-83 seq20435 102 9e-17 >seq19105 Length=237168 Score = 322 bits (356), Expect = 5e-83 Identities = 614/894 (69%), Gaps = 23/894 (3%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||| ||||| ||||||| |||||| |||||||| | ||||| || |||| || || Sbjct 36564 TTAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCG-ATG--TAACTCC-CA 36619 Query 92802 TTTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860 | || ||||| || ||||| || || ||||| || || || || |||||||| ||| Sbjct 36620 TGCGCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCA 36679 Query 92861 AATTCACTA--GTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACA 92918 | || | | || ||||||||| | ||| ||| ||| | || | ||| || Sbjct 36680 TCTCCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACGCCAAGCTCAACCA 36739 Query 92919 ATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-A 92977 ||| | |||||| ||||| || || || | ||||||| | |||| ||||| || | | Sbjct 36740 ATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCA 36799 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || | || || || || ||||| | ||| || | ||| || || || || | | | Sbjct 36800 AGTTG-ACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATG 36858 Query 93038 ATTTCTATTA------CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAG 93091 ||||| || | | | |||| || || || | || | | |||| ||| Sbjct 36859 ATTTCAATGATGCGTTCCCGACTA------GGCCGCTGCACCAAATGTTGGAACAT-AAG 36911 Query 93092 CAC-GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| |||||||| ||| | |||||| || || || ||||| || ||| |||||| | Sbjct 36912 CACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAG 36971 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | ||||| || ||||| ||||| || || || ||||| || ||| || || Sbjct 36972 TCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAA 37031 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || ||||| || || ||||| || | ||||||||| |||| || || | || Sbjct 37032 GATGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGA 37091 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 |||||| | |||||| || || || ||||| | || | ||||| || || || Sbjct 37092 GATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATT 37151 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 || || || ||||||| | | ||| | || || || || || | || | ||||| Sbjct 37152 GAAGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACAT 37211 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 ||| ||||| ||||||||||| ||||| ||||| || || || || | || || || | Sbjct 37212 TTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCAC 37271 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 |||||||||||| ||| | || || |||||||| || || || ||||| || || || Sbjct 37272 CTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGC 37331 Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 ||| || ||||| | |||| ||| ||||| ||||| ||| ||||||| ||||||| Sbjct 37332 AAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATC 37391 Query 93571 GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 | | || || || ||||| ||||||||||| ||||| ||||||||||| || Sbjct 37392 AGTCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGC 37445 >seq20435 Length=10752 Score = 102 bits (112), Expect = 9e-17 Identities = 70/78 (90%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 8038 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 7979 Query 126323 GTGGGTTCGAACCCCACA 126340 |||||||||||||||||| Sbjct 7978 GTGGGTTCGAACCCCACA 7961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556677356130960