Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq25128 251 6e-62 seq20348 143 2e-29 seq24486 129 5e-25 >seq25128 Length=30855 Score = 251 bits (278), Expect = 6e-62 Identities = 965/1494 (65%), Gaps = 46/1494 (3%) Strand=Plus/Minus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 |||| || || |||| |||||| | || || ||||| ||||||| ||| ||||| ||| Sbjct 20196 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCT 20137 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 || || | || ||||| | | | ||||| | || ||| ||||| ||||| Sbjct 20136 GTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGGT 20077 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 | | ||| || ||||||||||| || |||||||| | |||||||| || ||| Sbjct 20076 TCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCC 20017 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || || ||||| |||||||| || ||||||||||| || | || | Sbjct 20016 ATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACTTCC 19957 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATC 129078 | || || ||| ||||| || | | ||| | ||||| |||| || ||| Sbjct 19956 TGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCATG 19897 Query 129079 TGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGA 129138 | || | | |||| ||||| | | ||||| ||| | | |||| || | Sbjct 19896 TCATCATCCCATAAATCCAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATTG 19837 Query 129139 AAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCA 129198 || || || | ||||||||||| ||||||||| || |||||||||| || ||| Sbjct 19836 AACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTCA 19777 Query 129199 TTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTTT 129258 || || || | || || || || | || |||||||| |||||| ||||||||| Sbjct 19776 TTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCCACAAGCAGCGAGTTT 19717 Query 129259 CGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTGGGT 129318 | | || |||| ||| || | ||||| ||||| ||||| | ||||||| Sbjct 19716 CTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGTTTGTGGGT 19657 Query 129319 GTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGGAA 129378 || | | ||||| ||||| |||| || ||| || | |||| | ||||| Sbjct 19656 GTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAACCAGCGTAGGTT 19597 Query 129379 TCGTGCACGCCGTAAGCTTTT--GCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAA 129436 || | |||| ||||| |||| || ||||| || || | || ||| | || | Sbjct 19596 TCATAGGGACCGT--CCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGTAGA 19539 Query 129437 TTGTTTCGGCAATTTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACGC 129495 | ||||| | | | || || || | || | ||| | ||| || || || || | ||| Sbjct 19538 TGGTTTC-GAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAGCGC 19480 Query 129496 AACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTA 129555 | || || | |||||| || || |||| || | || ||||| |||||| || | Sbjct 19479 ATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTAAA 19420 Query 129556 TTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTC 129615 |||||||| | |||| || |||||||| ||||| || || |||||||| ||||| Sbjct 19419 TTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAATTT 19360 Query 129616 TTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATG 129675 || ||| |||| || || | |||| | | |||| | | | | | || | Sbjct 19359 CTGGTGACAGTTTTAGTAACTTCCTTTAGTTTCTTGAAATCGAA--TGTTTTCTCTGAAG 19302 Query 129676 TCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCA 129735 || ||||| ||| | ||||| |||||||||||||||||| | || | | Sbjct 19301 TC-ACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTGCC 19243 Query 129736 CTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGA 129795 || || |||||||||| ||| | || || ||| |||||||| | || || ||| Sbjct 19242 GAATATTCAACAATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGA 19183 Query 129796 TTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGC 129855 || || ||| ||||||||| |||||| | | ||||||||| ||||| || || ||||| Sbjct 19182 TTGCTCTTCCTGTTGCAAGAGTCTTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGA 19123 Query 129856 GTTTCGACAATGG--TCCTGAACAAGTCTCGAGCCTTGATCTGTCTTACA-AATTT--GC 129910 | ||| ||||||| | | || ||| | | || || ||| ||| |||| || Sbjct 19122 GATTCAACAATGGCATAC-CAAAGAGT-TTGTGCTTTAATC------ACACGATTTGCGC 19071 Query 129911 CACATT---TCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGA 129967 || | |||| || |||||| | ||||| || || || ||| Sbjct 19070 GACCCTCGCTCTCATACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAAC---GTCTT 19014 Query 129968 GCAACGGCGATTCAC----GCGGACACATCAAACTCCACATTC-CATCCGCTTCGACTCG 130022 ||| | || ||| | ||||||| || ||| || | ||| ||||| || || Sbjct 19013 CCAA-GCCGGGACACTTGTGAGGACACAACAGCGACCA-ATCCTCATTGGCTTCCACACG 18956 Query 130023 TTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTT----TCTAT 130078 |||||||||| |||||||| ||||| |||||| || | ||| || ||| | ||| | Sbjct 18955 CTTCATAAACAGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCT-T 18897 Query 130079 CCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTT 130138 ||| | ||| |||| ||| || || | ||| || | || |||| ||||| |||| Sbjct 18896 CCTTG---CCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTT 18840 Query 130139 CAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGG 130195 | | ||||| || | ||||| ||| || ||| ||||| || || | || | Sbjct 18839 CCAGGTAAATGGCAAAAGCGCCTGGCCGCTTGCCGCCACCTTGATCGACATAACGAGCCA 18780 Query 130196 CATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGC 130249 |||| || | |||| | ||| | | |||| || || | ||||| || |||| Sbjct 18779 CATTATTAAACACTCTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGC 18726 >seq20348 Length=30608 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || |||||||| | || ||||| || |||||||||| || ||| | | Sbjct 12692 GATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTC 12751 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | || || ||||| || ||||| ||||| || || ||||| || ||||| Sbjct 12752 GGATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCA 12811 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| ||| | || ||||||||||| || || || ||| ||||| | ||||||||||| Sbjct 12812 ACAGCGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGATTACAA 12871 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||||| || || | || || || | || | ||||| ||| Sbjct 12872 TATCCAAAAAGAGTCTACATTGCACTTGGTGCTCCGCCTTCGCGGTGGT 12920 >seq24486 Length=213816 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || ||||| || || || || || |||| | || ||||| Sbjct 88139 GTCAAAATGCAAATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAG 88198 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 || | || ||| | || || |||| || || || ||||||||||| ||||| || Sbjct 88199 CCCTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCA 88258 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 |||||||| ||||| || || || ||||| ||| | |||||| |||||| | ||||| Sbjct 88259 GATCAACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGAC 88318 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || || || ||| | || || || |||| |||| || ||| Sbjct 88319 TACAACATCCAGAAGGAGTCGACCTTGCACTTGGTGCTGCGTCTGCGTGGTGGT 88372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419593187826010