Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq20348 176 8e-39 seq24486 159 6e-34 seq25099 145 1e-29 seq19591 120 6e-22 >seq20348 Length=30608 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||| | |||||||| | || |||||||||||||| || |||||||| Sbjct 12919 CCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAA 12860 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| || ||||| ||||| || || | | ||||| || || ||| Sbjct 12859 AGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGA 12800 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| |||||||| || ||||| |||||||| || | | ||| || Sbjct 12799 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACC 12740 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||||||||| || ||||| || ||||| Sbjct 12739 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 >seq24486 Length=213816 Score = 159 bits (176), Expect = 6e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| | || ||||| || |||||||| || ||||| Sbjct 88371 CCACCACGCAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 88312 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | ||||| || || ||| Sbjct 88311 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGA 88252 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| |||||||| |||||||||||| | | || || Sbjct 88251 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACC 88192 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||||||||||||| || || || | ||| || ||||| || |||||| || Sbjct 88191 TCCAAGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCATTTTG 88141 >seq25099 Length=83779 Score = 145 bits (160), Expect = 1e-29 Identities = 158/209 (76%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || |||||||| || ||||||||||| || Sbjct 21191 CCGCCTCGGAGTCGGAGGACCAAGTGAAGGGTCGACTCTTTCTGAATGTTATAATCAGAA 21250 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| ||||| | || || || || || Sbjct 21251 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGG 21310 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGC--CTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 || |||||||| ||||| ||||| || ||| || ||| ||||| || | | ||||| Sbjct 21311 ATTCCTTCCTTATCTTGGATCTTGGCCNCTTCACATTCTCAATGGTATCAGAAGGTTCTA 21370 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| ||||||||| ||||| || ||| Sbjct 21371 CTTCCAGGGTGATGGTCTTTCCGGTCAGG 21399 >seq19591 Length=17715 Score = 120 bits (132), Expect = 6e-22 Identities = 204/293 (70%), Gaps = 12/293 (4%) Strand=Plus/Plus Query 268209 CCCCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTT 268268 |||| || ||||||||| ||||| |||| | ||| | ||| |||||||||||| Sbjct 3924 CCCCGGTGGCAATCACATAGTCCGCTGGGGTATCGCGCTGTAACATCATCCACATTGCTT 3983 Query 268269 CGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGC 268328 | |||||||| |||||||||||||||||||| | ||||| || || | | | Sbjct 3984 CCACATAGTCGGCAGCATGGCCCCAATCGCGCTTCGAGTCCAGATTGCCTAACTCAAAGT 4043 Query 268329 ATTTC---TGCTTGCCGA-GCTTCACGCGTGCAAGACCG--CGAGTGATTTTTCGGGTCA 268382 ||| | || || | | || || |||| || || ||||| || |||| Sbjct 4044 ATTCCATTTGGTTAAGTAAGATTTTGGCC------ACCGATCGTGTTATTTTGCGTGTCA 4097 Query 268383 CGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACA 268442 | || | ||||||||| | || ||||| |||||||| |||||||||||||| || |||| Sbjct 4098 CAAAGTTTTCGCCACGTCGCGGACTCTCATGGTTGAAAAGGATGCCGTTGCAGGCAAACA 4157 Query 268443 TGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCA 268495 | || ||||| || || || | ||| ||||| | || ||||||| ||| Sbjct 4158 TATTGTAGGCCTCTCGATAATTGATGACGATCCAGAAGCCATACATCTTGGCA 4210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921318794540880