Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq19105 183 6e-41 seq25128 125 1e-23 >seq19105 Length=237168 Score = 183 bits (202), Expect = 6e-41 Identities = 478/718 (67%), Gaps = 31/718 (4%) Strand=Plus/Minus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||||||||| || || ||||| || || || || || || |||| | | || | Sbjct 37342 TGGCCTTCTTTGCTGCTTCTGATGGAATTGTTAACGAAAATCTGGTCGAACGTTTTAGCC 37283 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 |||| |||||| ||||| || ||||| || ||||||||||| ||||| ||||| | Sbjct 37282 AAGAAGTGCAGGTGACCGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATG 37223 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC-CGTCGAG 42599 |||| || || |||| || |||||| |||| || ||| |||||| | || || Sbjct 37222 TGCATTCCGAAATGTA---CAGTGTGCTCATTGACACCTATATCAGGGATCCTCATC-AG 37167 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC--CTGCATCAAGAAGAAGGCGGACT 42657 || || || ||||| ||||| || |||||||| ||| | ||| |||||| |||| Sbjct 37166 CGAGACTATCTCTTCAATGCCATTGAAACGATGCCGGCTG--TTAAGCGGAAGGCAGACT 37109 Query 42658 GGGCGCTCAACTGGATCGAGAGTC-CCGACG-----CAACGTTCGGCGAGAGGCTGGTAG 42711 |||| || |||||| || ||| | |||| || || || | | | | Sbjct 37108 GGGCTCTTTCTTGGATC-----TCTTCGAAGGCTGCCAAC-TTTGGTGAACGTATTATTG 37055 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 | ||| | || || || |||||||||||| || ||| || |||||||||||||| | Sbjct 37054 CTTTTGCTGCTGTTGAAGGCATCTTCTTCAGTGGGAGCTTTGCATCCATCTTCTGGCTGA 36995 Query 42772 AGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 || || | ||||| ||||| || ||||| |||||| | ||| | || || | Sbjct 36994 AGAAGCGTGGACTTATGCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGATGAAG 36935 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA-AGCCCTCG 42890 | |||||| | |||||||| || ||||| | || | || || | ||| | Sbjct 36934 GTCTGCATTGTGACTTTGCGGTGCTTATGTTC-----CAACATTTGGTGCAGCGGCCTAG 36880 Query 42891 -AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 ||| || || | ||||| ||||| || ||| || ||| ||||||||||||| Sbjct 36879 TCGGGAACGCATCATTGAAATCATAACGGATGCTGTGACTATTGAGCAGGAGTTCCTCAC 36820 Query 42950 GCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 | |||||||||| | || | ||||||||| | || |||| | | || ||| | Sbjct 36819 CGATGCGCTGCCCGTCAACTTGATTGGCATGAACTGTGCTCTGATGTCCGAATATATCGA 36760 Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTG 43069 || ||||| || | || || || | || | || | |||||||| | Sbjct 36759 GTTTGTCGCTGATCGCCTATTGGTTGAGCTTGGCGTGGGCAAGATTTACAACACAAAGAA 36700 Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 || ||| || ||||||| ||||| ||||| ||||| |||||||| ||||||||| Sbjct 36699 TCCATTCTCGTTCATGGAGATGATCTCTTTGGATGGCAAAACCAACTTCTTCGAGAAG 36642 >seq25128 Length=30855 Score = 125 bits (138), Expect = 1e-23 Identities = 564/883 (64%), Gaps = 33/883 (4%) Strand=Plus/Minus Query 244299 CCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGG 244358 ||||||| || ||||||| | |||||||| || || | || ||||||| |||| Sbjct 19649 CCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGG 19590 Query 244359 GACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGA 244418 ||||||| || ||||||| ||| || | || ||||| | ||||||||||| |||| Sbjct 19589 GACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGA 19530 Query 244419 AGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGA 244478 ||||| || || | ||| ||| | | |||| | || ||||| || | Sbjct 19529 AGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAGCGCATCAGAATTA 19470 Query 244479 AGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCA 244538 || ||||||| | ||||| ||||| ||||| ||||| | |||| ||||| | Sbjct 19469 AGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCT 19410 Query 244539 TGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA 244598 | || ||||||| || || | ||| || || | ||||| | || | ||||| || Sbjct 19409 TTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAATTTCTGGTGA-CA 19351 Query 244599 ---TGCGGACGACGTCGGCCAGCAGCT-GAAAGTCGTACTCGTAGGGATCCTCGGCGATG 244654 | | | || || || || |||| ||| | | | ||| | | | Sbjct 19350 GTTTTAGTA--ACTTCCTTTAGTTTCTTGAAA-------TCGAATGTTTTCTCTG--AAG 19302 Query 244655 GTGATCCTCACAAACTCGTTGAGGGCGA-CGCTGGCCAGGTTGCAGACGGCCACCTCCTC 244713 |||||||| || | ||| | || || ||| ||||||||||| | ||| || Sbjct 19301 -------TCACAAACATATTCAAGGCTATCGATG-CCAAATTGCAGACGGCAATCTCATC 19250 Query 244714 CGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTG 244773 | | || | ||||| |||||||||||||| ||||| ||||||||||| | | Sbjct 19249 GGGTGCCGAATATTCAACAATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATT 19190 Query 244774 CTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTC 244833 ||| |||||| ||| |||||| | ||| ||| |||||||| | || || ||||| Sbjct 19189 CTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGAAGAGCATGTACGGAGTGCCAGTCTC 19130 Query 244834 GAGCTGGGCGACGAGGACGCTGTTCCAGAG-GTCCCTAGCCTTGACCGTCCTGCGA---G 244889 | || | | | | | | ||| || || | || || | || ||| | Sbjct 19129 AACTTGAGATTCAACAATGGCATACCAAAGAGTTTGT-GCTTTAA---TCACACGATTTG 19074 Query 244890 CCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGT 244949 | ||||| ||| || || ||||| ||| || || ||||| || || | Sbjct 19073 CGCGACCCTCGCTCTCATACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTT 19014 Query 244950 CTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCT 245009 | | |||||| ||| || |||| || ||| || | | | | || | || Sbjct 19013 CCAAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCTTCCACACGCT 18954 Query 245010 GCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCG 245069 ||| || || ||||| ||||| | ||| | |||||| || | | || ||||| ||| Sbjct 18953 TCATAAACAGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCT 18894 Query 245070 AGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGT 245129 ||| |||||||| | || ||||| || ||||||| ||| ||||| || |||| || Sbjct 18893 TGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGT 18834 Query 245130 AGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 | | || | ||||| ||||||||| ||| || || || || Sbjct 18833 AAATGGCAAAAGCGCCTGGCCGCTTGCCGCCACCTTGATCGAC 18791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944028111059040