Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq20348 140 8e-28 seq25099 104 6e-17 seq24486 102 2e-16 seq14047 89.7 1e-12 >seq20348 Length=30608 Score = 140 bits (154), Expect = 8e-28 Identities = 148/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||||||||| || |||| || ||||| || ||||| ||||| || || || ||| Sbjct 12883 TCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAG 12824 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||||||| ||||| ||||||||||| ||||| || || ||||| || Sbjct 12823 ATCAAACGCTGTTGA---TCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACA 12767 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | ||| || ||| || || || ||||| ||||| || || || || || Sbjct 12766 TTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTA 12707 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 12706 ACGAAGATTTGCAT 12693 >seq25099 Length=83779 Score = 104 bits (114), Expect = 6e-17 Identities = 151/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||||| || || | |||| || ||||| || || ||||| || | Sbjct 21191 CCGCCTCGGAGTCGGAGGACCAAGTGAAGGGTCGACTCTTTCTGAATGTTATAATCAGAA 21250 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || ||||| || || || | || || || |||||||| |||||||| ||| ||||| Sbjct 21251 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGA---TCTGGA 21307 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGC--TTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||||||| ||||| ||||| || || ||||| || || || | ||| | || Sbjct 21308 GGGATTCCTTCCTTATCTTGGATCTTGGCCNCTTCACATTCTCAATGGTATCAGAAGGTT 21367 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||||| || ||||| ||||| |||||||| Sbjct 21368 CTACTTCCAGGGTGATGGTCTTTCCGGTCAG 21398 >seq24486 Length=213816 Score = 102 bits (112), Expect = 2e-16 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||| || || || | || || || |||||| Sbjct 88335 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAG 88276 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||||||||||||| ||||||| ||||| || || |||||||| || || || || Sbjct 88275 ATCAGACGCTGTTG---ATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACA 88219 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || | ||||| ||||| || |||| || || Sbjct 88218 TTCTCGATGGTGTCAGAGGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTTTTC 88159 Query 288460 ACGAATATCTGCATTATG 288477 ||||| || |||||| || Sbjct 88158 ACGAAGATTTGCATTTTG 88141 >seq14047 Length=15719 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| || || | |||| || ||| ||||| ||||| || || | Sbjct 15697 CCACCACGTAGTCGGAGGACCAAGTGAAGTGTCGATTCCTTTTGAATATTGTAATCTGAA 15638 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||||||||| ||| |||||| Sbjct 15637 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGA---TCTGGG 15581 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404 ||||||||||| || ||||| || || ||||| || || Sbjct 15580 GGGATTCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTC 15540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179256077158012