Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq13822 98.7 1e-15 seq18322 96.9 4e-15 >seq13822 Length=124548 Score = 98.7 bits (108), Expect = 1e-15 Identities = 274/416 (66%), Gaps = 16/416 (4%) Strand=Plus/Plus Query 10783 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 10842 || ||| ||||| || || || || || || || ||| || | || ||||| || Sbjct 47544 CTGACGGTCAAAACGGCCGGGACGCAGCAGAGCCGGGTCCAGCACGTCCGGACGGTTGGT 47603 Query 10843 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 10902 ||| || || | | | |||| | | | ||||| || |||||||| || | || Sbjct 47604 CGCGGCAATCAGGATCACGCCCTCATTGCTTTCAAACCCGTCCATCTCGACCAGCATCTG 47663 Query 10903 ATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTT 10959 || | || || || || ||||||||| || |||| ||||| | || || Sbjct 47664 GTTCAGCGTCTGCTCACGCTCATCATTCCCGCC---ACCAAGGCCCGCGCCACGATGGCG 47720 Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGA----TTTTCACGGGCAA 11015 || |||||||||||||| || ||||| | ||| ||||| |||| | || Sbjct 47721 GCCCACGGCGTCAATTTCGTCAATGAAGATGATGCACGGCGCGGCCTTTTTGCCCTGC-- 47778 Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075 || || || || || || | ||||| ||||| ||||||||||||||||| | | Sbjct 47779 --TCGAACATGTCACGCACGCGGGACGCACCAACACCGACAAACATTTCCACAAAGTCAG 47836 Query 11076 CGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 11134 ||||| || | || ||| || || |||| |||||||| ||||| || || || ||| Sbjct 47837 ACCCGGAA-ATGGTGAAGAACGGCACATTGGCCTCACCCGCAATGGCACGCGCCAGCAGG 47895 Query 11135 GTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 ||||| ||||| || || ||| | |||||| | || ||||| || |||| Sbjct 47896 GTCTTACCCGTGCCCGGAGGCCCGACCAGAAGGACGCCCTTGGGGATTTTGCCACC 47951 >seq18322 Length=84725 Score = 96.9 bits (106), Expect = 4e-15 Identities = 171/247 (69%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 171907 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATT 171966 |||||| ||||| ||||||| || || |||||||| | || || | | ||| || || Sbjct 71531 ATCTTTTCCACCGGTGAGACGAGTACCGAATTGACCGCGTGGCTCTAACAAATTAATGTT 71590 Query 171967 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 172025 ||| || |||| |||| | ||||| || ||||| || || || || |||||||||| Sbjct 71591 GTTCGATCCCACATAGTTCTGCGCCAAATTCACAATGGTCATTTGC-AGCGAGACTTCAC 71649 Query 172026 CGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCAT 172085 | ||||| || | ||| | || || || | ||| || ||| || ||||| | ||| Sbjct 71650 CATGATGATACGATGACATTTCGGCAACGGAACCCGACAGCTGGGCAACCTTAACTTCAC 71709 Query 172086 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 172145 |||| ||| | || |||| | |||| ||||| | ||| |||||| | ||| | Sbjct 71710 GCTTGTCGTTACGCTTAAAACACGTAAACATAACCTTCCGCTGACCAGGCTTTAAGCCAT 71769 Query 172146 CGGCCAT 172152 | |||| Sbjct 71770 CTACCAT 71776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597156816790320