Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq25128 149 6e-31 seq25099 116 4e-21 seq24486 114 1e-20 seq20348 111 2e-19 seq14047 102 8e-17 >seq25128 Length=30855 Score = 149 bits (164), Expect = 6e-31 Identities = 550/850 (65%), Gaps = 19/850 (2%) Strand=Plus/Minus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTG--TATTGCACAATTTCTGCGC 154644 || ||||| ||||| |||||||| || || | | | | |||| |||||||| | || Sbjct 19278 GATGCCAAATTGCAGACGGCAATCTCATCGGG--TGCCGAATATTCAACAATTTCGGTGC 19221 Query 154645 ACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGT 154704 | | || |||||| |||||||| | || | |||||| || ||||||| | || Sbjct 19220 AGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGT 19161 Query 154705 CTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTG--TGCGAAA 154762 ||||| | | |||||||| ||||| || || ||||| | ||||| ||| | | | ||| Sbjct 19160 CTTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAA 19101 Query 154763 CAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAG 154822 || || | || | || || | | ||| ||||||||||| | | ||||| Sbjct 19100 GAG--TTTGTGCTTTAATCACACGATTTGCGCGACCCTCGCTCTCATACTTTGTATACAG 19043 Query 154823 TTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAA 154882 || ||||| || | | ||||| ||| |||||||| || ||||||| || Sbjct 19042 CTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACAG 18983 Query 154883 TGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTA 154942 ||||| || || || || || |||||||||| ||| || | |||||| ||||| Sbjct 18982 CGACCAATCCTCATTGGCTTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTA 18923 Query 154943 CAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATC 155002 || | |||||| || | | ||||| |||| |||| || | | ||| || || Sbjct 18922 GAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTC 18863 Query 155003 ATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCC 155059 | | || |||| ||||| || || | || | ||| | |||||| || || || Sbjct 18862 AAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGCCGCTTGCCGCC 18803 Query 155060 TCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCT 155119 |||||||| || | ||| | |||||| |||| | | || || ||| || | Sbjct 18802 ACCTTGATCGACATAACGAGCCACATTATTAAACACTCTGAGCATGGGCACCAAACCATT 18743 Query 155120 GGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAAC 155179 | ||||| || ||||||| |||| | |||| ||||| ||| ||||| | Sbjct 18742 TGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTGGCACGAATACAATGCACATTGAG 18683 Query 155180 GCCCAAACCTCCGCCGTATTT--AGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATT 155237 || | || || || |||| |||| |||| ||| | || | | || | | || Sbjct 18682 TCCAATGCCACCAGCGGATTTGGAGATCATTGCACACTGCTCGACGGACTT--GAAAATG 18625 Query 155238 CCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGG 155297 |||| |||| || || || | | ||||||||| || | || || || | Sbjct 18624 CCTTCGATGGAATCGGAAACCATTGTTAGAAGGAAACACGATGACATCTGGGGACGATTG 18565 Query 155298 CAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTA-AG-T 155355 | | || ||||||| || || || || ||||| || ||| || | | || | Sbjct 18564 GTGGCAGCAGCAAATAGCGTTGGCGATGCATGCGTAAA-ATAGCGTT-CCGATAACAGAT 18507 Query 155356 TGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCA 155415 ||||||| |||| |||| || ||||| || || || || |||||||| | ||||| Sbjct 18506 TGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCATGGATTCCAATCGCCACTCTCATCA 18447 Query 155416 GCATGTGTTG 155425 ||||||| || Sbjct 18446 GCATGTGCTG 18437 Score = 136 bits (150), Expect = 4e-27 Identities = 290/431 (67%), Gaps = 8/431 (2%) Strand=Plus/Minus Query 154075 ACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACG 154134 ||||||| || || || || || || | || || || |||| ||| |||||||| | Sbjct 19793 ACGGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAG 19734 Query 154135 CCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAAT 154194 |||| | || ||||||| | || || | | || |||||||| | | | ||||| Sbjct 19733 CCACAAGCAGCGAGTTTCTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAAT 19674 Query 154195 TCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCG 154254 ||| | ||| || ||| | || |||||| ||||| |||| || ||| ||| ||| Sbjct 19673 CCCAAAGGTTTGTGGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCG 19614 Query 154255 GACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTA 154314 ||| || || | || || |||| | || |||| || |||||||| || | Sbjct 19613 GACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAA 19554 Query 154315 ACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTT 154374 || ||||||| | ||||||| || || | || | || | |||||||||||| | Sbjct 19553 GGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCT 19494 Query 154375 CGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGG 154434 | || || || | || | | || || ||||| | || |||| ||| | |||| || Sbjct 19493 CATAGGGAAAGCGCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGG 19434 Query 154435 GTCTGTGTTTTAAATTCGATT-CTTTGGCAGCCTC---CAGAGGATAATAATTGATATCG 154490 | | ||| ||||||| |||| ||||| |||| ||| ||||| ||||||||||| Sbjct 19433 GACGATGTCTTAAATTGGATTTCTTTG----CCTCGGGCAGCGGATAGTAATTGATATCA 19378 Query 154491 ATAATTTTATT 154501 || ||||| || Sbjct 19377 ATGATTTTGTT 19367 >seq25099 Length=83779 Score = 116 bits (128), Expect = 4e-21 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | || || || | |||| ||||| ||||| |||||||| ||||| | Sbjct 21190 ACCGCCTCGGAGTCGGAGGACCAAGTGAAGGGTCGACTCTTTCTGAATGTTATAATCAGA 21249 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || |||||||||||||| | ||||| |||||||| || ||||| Sbjct 21250 AAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 21309 Query 64336 AATTCCTTCTTTTTCTTGTATTTT--TTGCTTTACAACCTCCACTGTATCACCGGCGTCC 64393 |||||||| || ||||| || || ||| ||| ||| | |||||| | || Sbjct 21310 GATTCCTTCCTTATCTTGGATCTTGGCCNCTTCACATTCTCAATGGTATCAGAAGGTTCT 21369 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCA 64421 ||||| | || | |||||| ||||||| Sbjct 21370 ACTTCCAGGGTGATGGTCTTTCCGGTCA 21397 >seq24486 Length=213816 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | || | ||||| || || || |||||||| || | Sbjct 88372 ACCACCACGCAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGA 88313 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || ||||||||||| || | || || ||||| || || || || Sbjct 88312 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGG 88253 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || || || ||| ||| ||| | || ||| || ||||| Sbjct 88252 AATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCAC 88193 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| ||||| ||||| ||||| ||||||||||| Sbjct 88192 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCATTTT 88142 >seq20348 Length=30608 Score = 111 bits (122), Expect = 2e-19 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| | || | || || |||||||| || |||||||| | Sbjct 12920 ACCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGA 12861 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||| | |||||||||||| | || | ||||| || || ||||| Sbjct 12860 AAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGG 12801 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCG--TC 64392 |||||||||||| || || | | || ||||| ||| || | |||| ||| || || Sbjct 12800 AATTCCTTCTTTGTCCTG-AATCTTGGCTTTGACATTTTCGATGGTAT--CCGACGGTTC 12744 Query 64393 CACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | ||| | |||||| || || | ||||| ||||| |||||||| Sbjct 12743 GACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 >seq14047 Length=15719 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| |||||||| |||||||| |||||||||| | ||||| | || || |||||| Sbjct 15673 TGAAGTGTCGATTCCTTTTGAATATTGTAATCTGAAAGAGTGCGACCATCCTCCAGCTGC 15614 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 |||||||| | || || |||||||| || || || ||||||||||| ||||| || || Sbjct 15613 TTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGGATCTT 15555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499480204511760