Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq6607 268 4e-67 seq11958 158 6e-34 >seq6607 Length=38272 Score = 268 bits (296), Expect = 4e-67 Identities = 475/691 (69%), Gaps = 9/691 (1%) Strand=Plus/Plus Query 65914 TTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCC 65973 ||||||||||||| | | ||||| |||||| || || || || ||| | |||| Sbjct 35453 TTCCCACCGGCTCTCTGGGGCTGGATATCGCTCTGGGGATTGGCGGCCTGCCGCGTGGCC 35512 Query 65974 GGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGG 66033 | || | || || ||||| || || || || || | ||| || || || || Sbjct 35513 GTGTGATTGAAATTTACGGCCCGGAAAGCTCCGGTAAAACCACGCTGGCGCTGCATGCCA 35572 Query 66034 TGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCG 66093 | || | ||||||||| || |||| | ||||| || || ||||| || | || | Sbjct 35573 TTGCAGAGGCCCAGAAGCGGGGCGGCACCTGCGCCTTTATTGATGCCGAGCACGCGCTGG 35632 Query 66094 ACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAG 66153 |||| | |||||| | |||||| |||||| | || ||||| || | ||||| | Sbjct 35633 ACCCCGGCTACGCCAAGAAGCTCGGCGTGGATATTGATAATCTGCTGATCAGCCAGCCCG 35692 Query 66154 ACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCA 66213 || | || |||||||| ||||| || | ||| || || ||||||| | || Sbjct 35693 ACGCGGGTGAGCAGGCGCTGGAAATTGCGGACACACTGGTGCGCTCTGGCGCGATTGATG 35752 Query 66214 TCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCG 66273 | | || ||||| |||||||||||| |||||||| || ||||| |||||||| || | Sbjct 35753 TGCTGGTGGTGGATAGTGTGGCGGCCCTTGTGCCGCGTGCCGAGCTTGAAGGGGATATGG 35812 Query 66274 GGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCG 66333 | ||| || ||||||||||||||||| |||||| |||||| ||||||||||||| | Sbjct 35813 GTGACAGCCATGTCGGCCTGCATGCCCGTCTGATGAGTCAGGCGCTGCGCAAGCTGACAG 35872 Query 66334 GCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCG 66393 || | |||| || ||||||| | | | | |||| ||| | || ||| || | Sbjct 35873 GCTCCGTTGCGCGCTCCAACACCATGATGATCTTCCTGAACCAGATCCGTCTGAAAATTG 35932 Query 66394 GC---AACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCT 66450 || | | ||| | |||| || ||||| || || || || || ||| |||| Sbjct 35933 GCGTGATGTTTGGCAA---CCCG---GAAACCACGACGGGCGGGAACGCACTGAAGTTCT 35986 Query 66451 ACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTG 66510 ||||||| |||||| ||||| | ||| | |||| || ||||| ||||||| | Sbjct 35987 ACGCCTCCGTGCGTCTGGATATTCGCCGCATCGGGTCCATCAAGGACAAGGATGAGGTGG 36046 Query 66511 TCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGG 66570 | ||||||| ||||| |||||||| ||||| |||||| |||| || ||| ||| |||| Sbjct 36047 TGGGCAACCAGACGCGGGTGAAGGTGGTCAAAAACAAGATGGCCCCGCCGTTCCGTCAGG 36106 Query 66571 CTGAGTTTTCCATCGTCTACGGCGAGGGCAT 66601 ||||| ||| | || ||||| ||||| Sbjct 36107 TCGAGTTCGATATCATGTATGGCGAAGGCAT 36137 >seq11958 Length=2353 Score = 158 bits (174), Expect = 6e-34 Identities = 242/343 (71%), Gaps = 9/343 (3%) Strand=Plus/Minus Query 66262 AAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGC 66321 |||| ||||| || ||| || || || |||||||||||||| ||| ||||| ||| Sbjct 1157 AAGGCGACATGGGCGACAGCCATGTGGGTCTGCATGCCCGCCTCATGAGCCAGGCTCTGC 1098 Query 66322 GCAAGCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGC 66381 |||||||||| || ||| | | || ||||||||||| | | |||| ||| | | Sbjct 1097 GCAAGCTGACGGGAACGGTCTCGCGCTCCAACACGCTCGTGATCTTCCTGAACCAGATCC 1038 Query 66382 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACCGGTGGTAAGG 66438 | ||| |||||| ||| | |||| ||| ||||| ||||| || || || | Sbjct 1037 GTATGAAAATCGGC---GTGATGTTCGGC---AATCCGGAGACGACCACGGGCGGCAACG 984 Query 66439 CTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAG 66498 | ||| |||||| |||| | || | ||| ||||| | |||| | || ||||| Sbjct 983 CCCTGAAGTTCTACTCCTCCATCCGCCTCGATATCCGCCGCATCGGCTCCATCAAGGACA 924 Query 66499 GCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTC 66558 || |||| ||||||||||| || ||||| ||||| |||||||||||| |||| || | Sbjct 923 AGGACGAGGTTGTCGGCAACCAGACCCGCGTCAAGGTCGTCAAGAACAAGATGGCCCCCC 864 Query 66559 CGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 66601 || ||| |||| ||||| |||| | || ||||| ||||| Sbjct 863 CGTTCCGTCAGGTCGAGTTCGACATCATGTATGGCGAAGGCAT 821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242392521083768