Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq25128 322 5e-83 seq19105 98.7 1e-15 seq24486 95.1 1e-14 seq20348 87.8 2e-12 >seq25128 Length=30855 Score = 322 bits (356), Expect = 5e-83 Identities = 966/1469 (66%), Gaps = 44/1469 (3%) Strand=Plus/Minus Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 || |||||||| || ||||| || | || || || || | ||| || ||||| ||| Sbjct 19791 GGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCC 19732 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 || | || || || | | ||| ||| || || | || | || ||||||| Sbjct 19731 ACAAGCAGCGAGTTTCTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCC 19672 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 || || | |||||| || |||||| |||||||| | | ||| || | ||| Sbjct 19671 CAAAGGTTTGTGGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGA 19612 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC 153326 | || || | || ||| ||||| ||| ||||| || || || ||||| || Sbjct 19611 CAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGG 19552 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCG 153386 || |||||||| ||||||||| ||| || | |||||| | | |||| || ||||| Sbjct 19551 GCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCA 19492 Query 153387 TACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446 || || | ||||| ||| | ||||||||||| | ||||| | || | ||| ||||| Sbjct 19491 TAGGGAAAGCGCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGA 19432 Query 153447 CGATG-CTTC---TCG-TTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGA 153501 ||||| ||| | | || || |||||| || || ||||||| |||| ||| | Sbjct 19431 CGATGTCTTAAATTGGATTTCTTTGCCTCGGGCA-GC----GGATAGTAATTGATATCAA 19377 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 | |||||||| | || | || |||||| | |||| ||||||| |||||| Sbjct 19376 TGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTTAGTTTCTTGAAATCGA 19317 Query 153562 AGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACG 153620 | || |||| || | | | ||| ||||| ||| || || |||| ||| |||||| Sbjct 19316 ATGT--TTTCTCTGAAGTCACAAACAT--ATTCAAGGCTATCGATGCCAAATTGCAGACG 19261 Query 153621 GCCGTCTCTTCGGCGTCGCTG--TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTA 153678 || |||| |||| || || | || | || || |||| |||||||||||||||||| | Sbjct 19260 GCAATCTCATCGG-GT-GCCGAATATTCAACAATTTCGGTGCAGAGGTTGCTGCATTTGA 19203 Query 153679 TGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACG 153738 || ||| | ||| ||||||||||| || | ||||| | |||||||||||||||||||| Sbjct 19202 TGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGAAGAGCATGTACG 19143 Query 153739 GTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAG---GTCCTGCGCTC 153792 | ||| ||||| ||||| | ||| || || | ||| | | || || || || Sbjct 19142 GAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAAG-AGTTTGTGCTTTAATC 19084 Query 153793 GCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGT 153852 ||| ||| ||| ||||||||||| || ||||| |||||| || | Sbjct 19083 ACACGATTTGC-----GCGACCCTCGCTCTCATACTTTGTATACAGCTTCTCAAAGTCAT 19029 Query 153853 CGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT 153912 | || | ||| | | ||||||||||| || ||||||| ||||||||| || | Sbjct 19028 CCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCAT 18969 Query 153913 CGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCG 153972 ||| | || || ||| |||||||| || | ||| | ||||| | ||| || || | Sbjct 18968 TGGCTTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAG 18909 Query 153973 CCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGAT-TGAGCACGCTATAGATGTCGGCG 154031 | || || ||| |||| |||| ||| || | || || | | |||| |||| Sbjct 18908 CTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTC-AAAGATATCGGAA 18850 Query 154032 TGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTTCCG---CCCTGATCGACG 154088 ||||| ||||| | ||| | ||| | || ||| ||||| ||| || |||||||| Sbjct 18849 TGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGCCGCTTGCCGCCACCTTGATCGACA 18790 Query 154089 TGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTG 154148 | || ||| ||| || || || | | |||||| ||| || ||| ||||| || Sbjct 18789 TAACGAGCCACATTATTAAACACTCTGAGCATGGGCACCAAACCATTTGAAGTGCCATTA 18730 Query 154149 GTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCG 154208 || | |||| | |||| ||| || | |||||| || | |||||||| || Sbjct 18729 GTGCCACAGATCGAGGTGCCCTTGGCACGAATACAATGCACATTGAGTCCAATGCCACCA 18670 Query 154209 CCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCG 154268 || | || || || || || | | | | | || | ||||| |||||| |||| Sbjct 18669 GCGGATTTGGAGATCATTGCACACTGCTCGACGGACTTGAAAATGCCTTCGATGGAATCG 18610 Query 154269 TCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAG 154328 | || | ||||||||| |||| || ||| || | || | ||| Sbjct 18609 GAAACCATTGTTAGAAGGAAACACGATGACATCTGGGGACGATTGGTGGCAGCAGCAAAT 18550 Query 154329 AGGGTGGGACTCGCGTGCGT-AAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGC 154387 || || || || ||||| ||| || || | | | || ||| || |||| || Sbjct 18549 AGCGTTGGCGATGCATGCGTAAAATAGCGTTCCGAT-AACAGATTGTAAGTCTCGACAGC 18491 Query 154388 GTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACG 154447 | ||||| || ||||| || || || | ||| || | ||| ||||||||||||||||| Sbjct 18490 GGAATCGATGTCTTCGCCATGGATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGACG 18431 Query 154448 TTCGGCGACT---CTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACC 154504 |||||||| | | |||| ||||| | | ||| | |||||||| ||| | || Sbjct 18430 TTCGGCGATTTTGCCATTG---ATCTTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCC 18374 Query 154505 GAAATACTTGTATTCAAAATCTAGCTCAT 154533 ||||| ||||| ||||||| | |||| Sbjct 18373 AAAATAGTTGTAGCCAAAATCACGATCAT 18345 >seq19105 Length=237168 Score = 98.7 bits (108), Expect = 1e-15 Identities = 271/407 (67%), Gaps = 9/407 (2%) Strand=Plus/Minus Query 52440 GGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTC 52499 || |||||||| ||||||| | | || | | || | ||||| || || || ||| Sbjct 37022 GGGAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGGACTTATGCCTGGACTTACATTC 36963 Query 52500 AGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCG-TGCCTCTACTA 52558 |||||| ||||| || ||||| ||||| ||||| ||||||||| ||| | | | Sbjct 36962 TCCAACGAATTGATCTCTCGCGATGAAGGTCTGCATTGTGACTTTGCGGTGCTTATGTTC 36903 Query 52559 CAAGACGCGCGTGACCGAAAAATTGGATTCGGACACG-ATCCTGAGCATGTTCAAGGAGG 52617 ||| | | ||| | | | | |||| ||| ||| | || | | ||| | Sbjct 36902 CAACATTTG-GTG-CAGCGGCCTAG---TCGGGAACGCATCATTGAAATCATAACGGATG 36848 Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677 | ||| |||| || ||||||| | || | |||||||| ||| | || | ||||||| Sbjct 36847 CTGTGACTATTGAGCAGGAGTTCCTCACCGATGCGCTGCCCGTCAACTTGATTGGCATGA 36788 Query 52678 AC-GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC 52736 || | || | |||| ||| || ||||||||||| || ||||| || ||||| |||| Sbjct 36787 ACTGTGCTCTG-ATGTCCGAATATATCGAGTTTGTCGCTGATCGCCTATTGGTTGAGCTT 36729 Query 52737 GGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796 || | ||| | |||| | ||||| || ||| ||| | | || || | Sbjct 36728 GGCGTGGGCAAGATTTACAACACAAAGAATCCATTCTCGTTCATGGAGATGATCTCTTTG 36669 Query 52797 GAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAGCG 52843 || ||||| |||||||| ||||||||| ||| || || ||| |||| Sbjct 36668 GATGGCAAAACCAACTTCTTCGAGAAGAAAGTGGGTGAATATCAGCG 36622 >seq24486 Length=213816 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || || || | | | |||||||| || |||||||||||| | Sbjct 88371 CCACCACGCAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 88312 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || || || | |||| ||||||||||| || || || Sbjct 88311 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGA 88252 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 88251 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACC 88192 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||||| || || || ||||| Sbjct 88191 TCCAAGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCAT 88145 >seq20348 Length=30608 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| ||||| || ||||| ||| | ||| ||| || || | ||| || |||| | Sbjct 12886 GACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCA 12827 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| | ||||||||| || ||||| || ||||||||||| ||| | || | ||| | Sbjct 12826 AAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTC-CTGAATCTTGGCTTTGAC 12768 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||| || | || || ||||| | || | || ||||| || || ||||| Sbjct 12767 ATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTT 12708 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 12707 AACGAAGATTTGCAT 12693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496098918758880