Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq6700 104 9e-18 seq3629 93.3 2e-14 >seq6700 Length=1378 Score = 104 bits (114), Expect = 9e-18 Identities = 116/153 (76%), Gaps = 8/153 (5%) Strand=Plus/Plus Query 34541 AGCGCATCCAGCACGAATGTCGTTTCCATAGAC----GATGAGACCCGCCACCCCACGAT 34596 || |||||||||||||| |||| | || | | |||||||| ||||| ||||| || Sbjct 471 AGGGCATCCAGCACGAA-GTCGGT---ATGGGCCGTTGATGAGACACGCCAGCCCACAAT 526 Query 34597 GTATCCGGCAAACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGAC 34656 | | |||||||||||||||||| || || ||||| || |||||| |||| ||| || Sbjct 527 GACCCGGGCAAACACATCAATGATGAAGGCTACATAAACAAAGCCCAGCCAAGTGGAAAC 586 Query 34657 GTAAGTAAAATCAGCCACCCACAGCTGGTCAGG 34689 ||||||||||| | ||||| ||| || ||| Sbjct 587 ATAAGTAAAATCCGAAACCCAGAGCCTGTTAGG 619 >seq3629 Length=7637 Score = 93.3 bits (102), Expect = 2e-14 Identities = 203/303 (67%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 33660 CCGACGTTCGGGGAGTCCTGCGCACAGTGGGTGTTTGACCTGGTGGCGGCCCTGTTTGGC 33719 ||||| ||||||| |||||| | ||| || ||| | | ||||| | || || Sbjct 6106 CCGACCATCGGGGAATCCTGCCGGGACTGGCTGAAGGACTTCGCTGCGGCGATTTTCGGG 6047 Query 33720 TCCTACGATGCGCAGACCGGTGTACGCCATATCAAGGAAGTTTTTATCCTTATCCCCAAG 33779 || |||||| | | || || || || | |||| |||| | || | || || |||| Sbjct 6046 TCTTACGATCCAGATACAGGCGTCCGGCTGATCACGGAATTCTTCCTGCTGGTCAGCAAG 5987 Query 33780 AAAAACAGCAAGTCCACGCTGGCTGCCGGGATCATGATGACGGCGCTGTTACTGAACTGG 33839 || |||| ||| || || | || ||||| | ||| | |||| |||| | ||||||||| Sbjct 5986 AAGAACACCAAATCGACCATCGCGGCCGGCGTGATGCTCACGGTGCTGATCCTGAACTGG 5927 Query 33840 CGGCAGGCGGCGGGCTACACCATTCTGGCCCCGACCGTGGAGGTGGCGGCTAACGCCTTC 33899 |||||| | || | | | |||||||| || || |||| || | ||||| ||| Sbjct 5926 CGGCAGTCTGCTGAGTTCCTGATTCTGGCACCCACGAAAGAGGCCGCCGACAACGCGTTC 5867 Query 33900 AACCCTGCCAGGGATATGGTACGACGGGACGAT---GATCTGGATGACCTCTGTCAGGTG 33956 || || ||| | || ||| | |||| ||| ||||| || | ||| | ||| ||| Sbjct 5866 AAGCCCGCCCGTGACATGAT---CCGGGCTGATCCGGATCTTGAAGCCCTGTTTCATGTG 5810 Query 33957 CAG 33959 ||| Sbjct 5809 CAG 5807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198686600817732