Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq25128 125 7e-24 seq24486 116 4e-21 seq20348 107 2e-18 seq19105 91.5 1e-13 seq14047 89.7 5e-13 >seq25128 Length=30855 Score = 125 bits (138), Expect = 7e-24 Identities = 930/1477 (63%), Gaps = 65/1477 (4%) Strand=Plus/Minus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 || ||| ||||| || | || | || || || |||||||||||||| ||||| || || Sbjct 20194 GTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCTGT 20135 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCG---ACATGACCGAGTACGTGGG 145835 |||||| | || ||||| | | || || ||| | || || | ||| |||| Sbjct 20134 CTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGT---TGGG 20078 Query 145836 TTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGC 145895 |||||| || | || | ||||| ||||| ||||| |||| | | || || || || Sbjct 20077 TTCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGC 20018 Query 145896 CATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTG 145955 ||| | || | |||| |||||||| ||||||| | |||||| || | Sbjct 20017 CATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACTTC 19958 Query 145956 CTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAA 146015 ||| || || || ||||| || | || ||| ||| | |||| || || Sbjct 19957 CTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCAT 19898 Query 146016 TTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTG 146075 || | | | | || || | || | | || || || ||||| | Sbjct 19897 GTCATCATCCCATAAATCCAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATT 19838 Query 146076 AAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTC 146135 ||||| |||| | ||||||||| || | ||| || ||||||| || ||||| Sbjct 19837 GAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTC 19778 Query 146136 GTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTT 146195 || ||||| | ||||| || || | || || ||||| ||||| |||| ||||| Sbjct 19777 ATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCCACAAGCAGCGAGTT 19718 Query 146196 TCTCACGCCGTG-TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCA--CAAATGATC 146252 ||| ||||| || ||||||| ||||| | ||| || || | | | | || | | Sbjct 19717 TCTAACGCCATGCTCTTTGA---TTTTCA---ATTTTAGAGCAGTCCAATCCCAAAGGTT 19664 Query 146253 CGTGGGATAGATATTGT---AGTTGTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATT 146309 ||||| | |||| | | ||||| |||| | | || | || || | | Sbjct 19663 TGTGGGTG---TCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAACC 19607 Query 146310 CTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGA 146369 |||| | |||||| |||||||| | | ||||| || || || || || || || Sbjct 19606 AGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACC 19547 Query 146370 AAAGTATATGGTCTCCGCGATCATGTAGTTGA-CGCTCCTGGCCTCCTCGCTGTCGTAGG 146428 | |||| ||||| || |||| | |||| | | | ||| | || || || |||| Sbjct 19546 ATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATAC-GGCTTTGTCACTCTCATAGG 19488 Query 146429 GGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGG 146487 | | | || | || | ||||||||||| | ||||| | || | |||| ||| || Sbjct 19487 GAA-AGCGCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGA 19429 Query 146488 TGTTTC---TTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATC 146544 ||| | ||| | || || || |||| || ||||| ||| | || ||||| Sbjct 19428 TGTCTTAAATTGGATTTCTTTGCCTCGG--GCAGCGG-ATAGTAATTGATATCAATGATT 19372 Query 146545 TTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAG---CAGGACATAGTCAAAT 146601 ||||| | ||| | |||| |||| || | || || | || || | ||| Sbjct 19371 TTGTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTTAGTTTCTTGAAATCG---AAT 19315 Query 146602 GTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCA 146661 ||||| | | | || || || | || | ||| || || ||||| || || |||||| Sbjct 19314 GTTTTC--TCTGAAGTC-ACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCA 19258 Query 146662 GTCTCGTCCT-TGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGAT 146720 |||| || || || |||| | ||||| |||| ||||||||||||||| |||||| | Sbjct 19257 ATCTCATCGGGTGCCG-AATATTCAACAATTTCGGTGCAGAGGTTGCTGCATTTGATGGT 19199 Query 146721 GCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCC 146780 ||| | ||| | || || || | ||||||| | ||| ||| ||||||||||||| Sbjct 19198 GCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGAAGAGCATGTACGGAGT 19139 Query 146781 CCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAA-TCTCTGGCCTTTACTTGTC 146839 || || || || | | || || ||| | | |||| | || ||||| Sbjct 19138 GCCAGTCTCAACTTGAGATTCAACAATG--GCATACCAAAGAGTTTGTGCTTTA------ 19087 Query 146840 TTTCGTACAGTTT-----ATTCT---TTTCGTATTTCTCGTACAATATTTCAAAACTAGA 146891 || || ||| | || | || || || |||| | ||||| | Sbjct 19086 -ATCACACGATTTGCGCGACCCTCGCTCTCATACTTTGTATACAGCTTCTCAAAGTCATC 19028 Query 146892 ACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATT 146951 || | |||| | ||||||| |||| | ||||| ||||||||||| || | ||| Sbjct 19027 CCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCATT 18968 Query 146952 CTCCTTCACGCGTTCCATAAACAAATCGGGAATCCA-AAGGCCCAGCATCAAGTCGCGAG 147010 | | ||| || | |||||||| |||||| ||||| ||||| || | | || |||| Sbjct 18967 GGCTTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTAG-AAGAGATCACGAG 18909 Query 147011 CCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGAT 147070 | || || || |||| |||| | | | || | || || | || || | || Sbjct 18908 CTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAAT 18849 Query 147071 GCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTACCG---CCCTGATCGACGT 147127 ||||||| |||| ||| ||| | |||||| ||||| ||| || |||||||| | Sbjct 18848 GCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGCCGCTTGCCGCCACCTTGATCGACAT 18789 Query 147128 GGCGCACCATGTTATTGAAGACTCGTAACATGGACAC 147164 || ||| ||||| || |||| | ||||| ||| Sbjct 18788 AACGAGCCACATTATTAAACACTCTGAGCATGGGCAC 18752 >seq24486 Length=213816 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||||| || || || ||||| ||| | Sbjct 88371 CCACCACGCAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 88312 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || |||||| |||||| ||||| ||||| || || Sbjct 88311 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGA 88252 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| |||||| | ||| || Sbjct 88251 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACC 88192 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| |||| ||||| || || || ||||| Sbjct 88191 TCCAAGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCAT 88145 >seq20348 Length=30608 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | || | |||||| || | |||||||||||||| |||||||||||| Sbjct 12922 GCACCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCG 12863 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||||| ||| || | || || || || ||||||| ||||| ||||| ||| Sbjct 12862 GAAAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGA 12803 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || || || |||||| ||| | | || |||| | ||||| ||| |||| || Sbjct 12802 GGAATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTC 12744 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || | || | || || || || || ||||| || || || ||||| Sbjct 12743 GACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 >seq19105 Length=237168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 47367 ATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGA-ATCTTTAGTGGGAATGAACGCGGA 47425 |||||| |||||| || |||| || ||||||| | ||| | ||| | ||||| | Sbjct 36839 ATTGAGCAGGAGTTCCTCACCGATGCGCTGCCCGTCAACTTGATTGGCA-TGAACTGTGC 36781 Query 47426 GATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCC 47485 ||||| | || ||||| |||||||| || ||||| | ||| |||| Sbjct 36780 TCTGATGTCCGAATATATCGAGTTTGTCGCTGATCGCCTATTGGTTGAGCTTGGCGTGGG 36721 Query 47486 CAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAA 47545 |||||||||| |||| ||||||||||| ||| ||| | | || || | || ||||| Sbjct 36720 CAAGATTTACAACACAAAGAATCCATTCTCGTTCATGGAGATGATCTCTTTGGATGGCAA 36661 Query 47546 GACCAACTTTTTCGAGAAGCGCGTCGGCGAATAT 47579 |||||||| ||||||||| || || |||||| Sbjct 36660 AACCAACTTCTTCGAGAAGAAAGTGGGTGAATAT 36627 >seq14047 Length=15719 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| ||| | ||||| || | || || || ||||||||||||||||| Sbjct 15697 CCACCACGTAGTCGGAGGACCAAGTGAAGTGTCGATTCCTTTTGAATATTGTAATCTGAA 15638 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| |||||| ||||||||||| || || Sbjct 15637 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 15578 Query 127007 ATGCCCTCCTTGTC 127020 || || || ||||| Sbjct 15577 ATTCCTTCTTTGTC 15564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475344158148960