Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq25128 298 5e-76 seq20348 98.7 9e-16 >seq25128 Length=30855 Score = 298 bits (330), Expect = 5e-76 Identities = 948/1461 (65%), Gaps = 44/1461 (3%) Strand=Plus/Plus Query 123235 CCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCA 123291 ||||||| |||| | ||||| | | || | ||||| || || |||||| || Sbjct 18756 CCATGCTCAGAGTGTTTAATAATGTGGCTCGTTATGTCGATCAAGGTGGCGGCAAGCGGC 18815 Query 123292 AAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATT 123351 |||||| | || || || || ||||| ||||| ||| | | || || || | Sbjct 18816 CAGGCGCTTTTGCCATTTACCTGGAACCTTGGCATTCCGATATCTTTGAGTTCTTGGACC 18875 Query 123352 TAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGG 123411 | ||| |||| ||| |||||| | | ||| || ||| | || ||||| || ||| Sbjct 18876 TCAAAAAGAACACGGGCAAGGAAGAGCACAGAGCTCGTGATCTCTTCTACGCCTTGTGGA 18935 Query 123412 TACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCG 123471 |||||||| |||||||| || || ||| | | | | |||||||| ||||||| Sbjct 18936 TACCCGATCTGTTTATGAAGCGTGTGGAAGCCAATGAGGATTGGTCGCTGTTGTGTCCTC 18995 Query 123472 ATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAAT 123531 | ||||||||||||| ||||||| || || | ||||| || |||| | | | Sbjct 18996 ACAAGTGTCCCGGCTTGGAAGACGTTTGGGGGGATGACTTTGAGAAGCTGTATACAAAGT 19055 Query 123532 ACGAGCGCGAAGG-----CAAACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATT 123586 | ||| |||| || |||| | || | || |||| | | | | Sbjct 19056 ATGAGAGCGAGGGTCGCGCAAA-----TCGTGTGATTAAAGCACAAACTCTTTGGTATGC 19110 Query 123587 TATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAA 123646 ||| | ||| | ||||| || || || || ||||||||||||| ||||||| | ||||| Sbjct 19111 CATTGTTGAATCTCAAGTTGAGACTGGCACTCCGTACATGCTCTTCAAAGACTCTTGCAA 19170 Query 123647 CAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 |||||| | ||||||| || | || || || ||||| || || || ||| ||||||| Sbjct 19171 CAGGAAGAGCAATCAGCAGAATGTTGGCACCATCAAATGCAGCAACCTCTGCACCGAAAT 19230 Query 123707 TATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA 123766 | | ||||| | ||||| | | ||||| || |||||||| ||||| | |||| Sbjct 19231 TGTTGAATATTCGGCACCCGATGAGATTGCCGTCTGCAATTTGGCATCGATAGCCTTGAA 19290 Query 123767 TCG--TTGCGTC------GAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCA-TAAC 123817 | ||| | | |||||| || ||||| | | || ||| | | | || Sbjct 19291 TATGTTTGTGACTTCAGAGAAAACA-----TTCGATTTCAAGAAACT-AAAGGAAGTTAC 19344 Query 123818 AAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGA 123877 |||||||| | |||||||||||||| || ||| | |||| ||||| || || Sbjct 19345 TAAAACTGTCACCAGAAATTTGAACAAAATCATTGATATCAATTACTATCCGCTGCCCGA 19404 Query 123878 AGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGA 123937 || || ||||| | ||| | || | || | ||| |||| || || ||||| Sbjct 19405 GGCAAAGAAATCCAATTTAAGACATCGTCCCATTGGCATTGGCGTTCAGGGCTTTGCCGA 19464 Query 123938 CGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCA 123997 ||| || | || ||||| | || || || || ||| |||| ||||| ||| ||| Sbjct 19465 CGCCTTAATTCTGATGCGCTTTCCCTATGAGAGTGACAAAGCCGTATTGCTCAATCAGCA 19524 Query 123998 AATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCA 124057 || |||||| || || || || || | ||||| || || || || || ||| | Sbjct 19525 GATCTTCGAAACCATCTACTATGGTGCCCTTGAGGCCAGTTGTGAGCTGGCTCAAAAGGA 19584 Query 124058 CGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACAT 124117 ||| | || |||| ||||| || | |||| |||| || ||| |||||||||| || Sbjct 19585 CGGTCCCTATGAAACCTACGCTGGTTGTCCGGTGAGCAAGGGAATTCTGCAGTACGATAT 19644 Query 124118 GTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGAC 124177 |||| | ||||| ||||| | ||||| |||| | | ||||| | | ||| | Sbjct 19645 GTGGGACAAGACACCCACAAACCTTTGGGATTGGACTGCTCTAAAATT--GAAAATCAAA 19702 Query 124178 G--CACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAA 124235 | || || | | ||||||||| | ||||| ||||| |||||| | ||||| || Sbjct 19703 GAGCATGGCGTTAGAAACTCGCTGCTTGTGGCTCCAATGCCCACGGCATCTACTGCCCAG 19762 Query 124236 ATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTG 124295 || | || || || || ||||| ||||||| ||| || | ||| | || || Sbjct 19763 ATCATGGGTAATAATGAGTCCTTTGAGCCGTATACTTCAAACATTTACACCAGGCGCGTT 19822 Query 124296 TTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAAT 124355 || |||| || || | ||| |||||||||||||| || || || | | || Sbjct 19823 TTGTCCGGAGAGTTCAATGTGGTAAATCATCATTTGTTGCGGGATTTAACCGAACTGGAT 19882 Query 124356 TTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATC 124415 || | ||||| ||||| || |||| ||||| ||||| | | || |||| Sbjct 19883 TTATGGGATGATGACATGAAGAATCAAATCATTGCCAGTCGTGGCTCCATACAAAACATC 19942 Query 124416 GCTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAA 124471 | || ||||| | | || | | || ||||||||||| |||||||| | || Sbjct 19943 GAATCCATTCCTCAGGAAGTACGGGATCTTTACAAAACCGTCTGGGAAATCTCGGTGAAG 20002 Query 124472 TAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTT 124531 | ||| || | | ||||| | || || || || | | || || |||||||| || Sbjct 20003 TCAACCATCA----AGATGGCAGCTGATCGCGGTGCTTTTATTGACCAGAGTCAATCATT 20058 Query 124532 TAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTG 124591 ||| | || || ||||||| ||||| | | || ||| || | | |||| Sbjct 20059 CAACATTCACGTTGCCGAACCCAACTACGGCAAGTTAACATCCATTCATTTCTTCTCGTG 20118 Query 124592 GA--GCAGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCC 124649 || ||| || ||||| || || |||||||| | | || || || || ||| |||| Sbjct 20119 GAAGGCA--GGCCTCAAGACAGGAATGTATTATCTGCGCACAAAGCCAGCTGCCAATGCT 20176 Query 124650 ATTCAATTTACCGTCGACAAA 124670 |||||||| || ||| ||||| Sbjct 20177 ATTCAATTCACAGTCAACAAA 20197 >seq20348 Length=30608 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | ||| | |||| || || || ||||||||||| |||||| Sbjct 12919 CCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAA 12860 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| |||||||| || || || | ||||| || || || || || ||| Sbjct 12859 AGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGA 12800 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||| || ||||| || ||||| ||| | ||| || || | ||||| Sbjct 12799 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACC 12740 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 || ||||| | || || || || || ||||| || || |||||||||| Sbjct 12739 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCATCG 12691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451854298845840