Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq19300 253 8e-63 seq11774 253 8e-63 seq8111 134 6e-27 >seq19300 Length=4712 Score = 253 bits (280), Expect = 8e-63 Identities = 425/615 (69%), Gaps = 0/615 (0%) Strand=Plus/Plus Query 22141 GCGCGGCTCGCTCTGCTGGCAGGTCGGCAATCACGTGCAGAAGGGCGAGATATTCCCGCT 22200 ||| || || || || ||||| || || ||||| || ||||| || || ||||| || || Sbjct 738 GCGTGGATCTCTTTGTTGGCAAGTTGGTAATCATGTTCAGAATGGTGAAATATTTCCACT 797 Query 22201 CGACACCGTGCTCTATCCGGTCTTTCGCGAGCACGGCCTGAAGCTACGGAATCGCGTGGT 22260 || || || || || | | || || || || || ||| |||| ||| | | | Sbjct 798 AGATACTGTTCTTTACCATATTTTCAAAGACCATGGTCTTAAGTTACGAAATAGAATTAT 857 Query 22261 GTGGCATTTCGAGCACGGCCTGCATTGCTCCAATCGCCTGTCCGGCCGCTACGAGACGAT 22320 |||||||||||||| || |||||| ||| | ||||| |||||||| || || || Sbjct 858 TTGGCATTTCGAGCATGGATTGCATTCTAAAAATAGACTGTCAGGCCGCTATGAAACCAT 917 Query 22321 TTTGTGGTTCACGAAGGGCGACGACTACGTATTCAACCTCGACCCGATCCGGGTTCCGTC 22380 | ||||||| || || || || || || ||| || || || ||||| || ||||| || Sbjct 918 TATGTGGTTTACTAAAGGAGATGATTATACATTTAATCTAGATCCGATACGTGTTCCATC 977 Query 22381 GAAATACCCCGGCAAGAAATACTTCAAGGGGCCGAAAGCCGGTCAGCTCTCCTGCAATCC 22440 ||||| || || ||||||| || || || ||||| || ||||| || | || || Sbjct 978 AAAATATCCAAATAAAAAATACTATAAAGGACCTAAAGCTGGGCAGCTTTCTGGAAACCC 1037 Query 22441 GCTGGGGAAAAACCCCGGCGATGTGTGGGTTTTCCCCAACGTCAAGAACAATCACGTCGA 22500 || || ||||| || || ||| | ||| | || || || || || || ||||| || || Sbjct 1038 TCTAGGCAAAAATCCGGGTGATATTTGGATATTTCCAAATGTAAAAAATAATCATGTTGA 1097 Query 22501 AAAGACCGACCACCCGTGCCAATTCCCGGTGGAGCTGGTCGAACGGCTCGTGCTGTCGCT 22560 ||| || || || |||||||| ||||| || | |||||| | || || || || | Sbjct 1098 AAAAACAATTCATCCTTGCCAATTTCCGGTTGAATTAGTCGAAAGACTTGTTCTTTCATT 1157 Query 22561 GACCAACCCCGGCGACGCGGTGTTCGATCCGTATATGGGCGTGGGGTCATCGGTCGTCGC 22620 || | || || || || |||||||||||||| || || || || | || || Sbjct 1158 AACGGATGAAGGGGATAATGTTTTTGATCCGTATATGGGAGTCGGATCTTCAATAGTGGC 1217 Query 22621 GGCCCTCAAGAACGATCGAGTCGGCTACGGCTGCGACGTCGTGAAGGAGTACGTCGAGGC 22680 || | ||||| |||| | || || || ||||| || || || ||||| ||||| Sbjct 1218 AGCTATAAAGAATAATCGTATTGGATATGGGTGCGATGTTGTTAAAGAGTATGTCGATAT 1277 Query 22681 CGCCTGGGAGCGCGTGCACCAGCTTCGAGCCGGCACACTCCAGACGCGCCCAATGCACAA 22740 || |||||| | || || | ||||||| ||||| || | || || || ||| | || Sbjct 1278 AGCTTGGGAGAGGGTTCATGACTTTCGAGCAGGCACTCTTGAAACTCGTCCTATGAATAA 1337 Query 22741 GCCCGTCTATGACCC 22755 ||| ||||||||||| Sbjct 1338 GCCAGTCTATGACCC 1352 >seq11774 Length=7091 Score = 253 bits (280), Expect = 8e-63 Identities = 425/615 (69%), Gaps = 0/615 (0%) Strand=Plus/Plus Query 22141 GCGCGGCTCGCTCTGCTGGCAGGTCGGCAATCACGTGCAGAAGGGCGAGATATTCCCGCT 22200 ||| || || || || ||||| || || ||||| || ||||| || || ||||| || || Sbjct 2397 GCGTGGATCTCTTTGTTGGCAAGTTGGTAATCATGTTCAGAATGGTGAAATATTTCCACT 2456 Query 22201 CGACACCGTGCTCTATCCGGTCTTTCGCGAGCACGGCCTGAAGCTACGGAATCGCGTGGT 22260 || || || || || | | || || || || || ||| |||| ||| | | | Sbjct 2457 AGATACTGTTCTTTACCATATTTTCAAAGACCATGGTCTTAAGTTACGAAATAGAATTAT 2516 Query 22261 GTGGCATTTCGAGCACGGCCTGCATTGCTCCAATCGCCTGTCCGGCCGCTACGAGACGAT 22320 |||||||||||||| || |||||| ||| | ||||| |||||||| || || || Sbjct 2517 TTGGCATTTCGAGCATGGATTGCATTCTAAAAATAGACTGTCAGGCCGCTATGAAACCAT 2576 Query 22321 TTTGTGGTTCACGAAGGGCGACGACTACGTATTCAACCTCGACCCGATCCGGGTTCCGTC 22380 | ||||||| || || || || || || ||| || || || ||||| || ||||| || Sbjct 2577 TATGTGGTTTACTAAAGGAGATGATTATACATTTAATCTAGATCCGATACGTGTTCCATC 2636 Query 22381 GAAATACCCCGGCAAGAAATACTTCAAGGGGCCGAAAGCCGGTCAGCTCTCCTGCAATCC 22440 ||||| || || ||||||| || || || ||||| || ||||| || | || || Sbjct 2637 AAAATATCCAAATAAAAAATACTATAAAGGACCTAAAGCTGGGCAGCTTTCTGGAAACCC 2696 Query 22441 GCTGGGGAAAAACCCCGGCGATGTGTGGGTTTTCCCCAACGTCAAGAACAATCACGTCGA 22500 || || ||||| || || ||| | ||| | || || || || || || ||||| || || Sbjct 2697 TCTAGGCAAAAATCCGGGTGATATTTGGATATTTCCAAATGTAAAAAATAATCATGTTGA 2756 Query 22501 AAAGACCGACCACCCGTGCCAATTCCCGGTGGAGCTGGTCGAACGGCTCGTGCTGTCGCT 22560 ||| || || || |||||||| ||||| || | |||||| | || || || || | Sbjct 2757 AAAAACAATTCATCCTTGCCAATTTCCGGTTGAATTAGTCGAAAGACTTGTTCTTTCATT 2816 Query 22561 GACCAACCCCGGCGACGCGGTGTTCGATCCGTATATGGGCGTGGGGTCATCGGTCGTCGC 22620 || | || || || || |||||||||||||| || || || || | || || Sbjct 2817 AACGGATGAAGGGGATAATGTTTTTGATCCGTATATGGGAGTCGGATCTTCAATAGTGGC 2876 Query 22621 GGCCCTCAAGAACGATCGAGTCGGCTACGGCTGCGACGTCGTGAAGGAGTACGTCGAGGC 22680 || | ||||| |||| | || || || ||||| || || || ||||| ||||| Sbjct 2877 AGCTATAAAGAATAATCGTATTGGATATGGGTGCGATGTTGTTAAAGAGTATGTCGATAT 2936 Query 22681 CGCCTGGGAGCGCGTGCACCAGCTTCGAGCCGGCACACTCCAGACGCGCCCAATGCACAA 22740 || |||||| | || || | ||||||| ||||| || | || || || ||| | || Sbjct 2937 AGCTTGGGAGAGGGTTCATGACTTTCGAGCAGGCACTCTTGAAACTCGTCCTATGAATAA 2996 Query 22741 GCCCGTCTATGACCC 22755 ||| ||||||||||| Sbjct 2997 GCCAGTCTATGACCC 3011 >seq8111 Length=8821 Score = 134 bits (148), Expect = 6e-27 Identities = 571/887 (64%), Gaps = 24/887 (3%) Strand=Plus/Minus Query 53904 AACAACATCGCCCCGCGCCAGTTCGACGGCTCGCACCTGACGCTGCCGGGCGTGT-CGCT 53962 |||||| | | ||||||| |||||| ||| |||| |||| ||||||||| | | | | Sbjct 6284 AACAACCTTGTCCCGCGCACGTTCGATGGCGCGCATCTGAAGCTGCCGGGAGCGAGCACG 6225 Query 53963 GCGCTTCGACCTGCGCGAGAACCAGAAGCGCGCCATCTGGCGCGGCATTCAGGAAGGCGA 54022 ||| | | ||||||||| | |||||||| | |||||||| ||| | ||| Sbjct 6224 GCGATCAG-CCTGCGCGACCATCAGAAGCGGGTGATCTGGCGGATCATCGCCAAGGGCAG 6166 Query 54023 TATGTACCTCGCGCACGCTGTCGGCGCGGGCAAGACGTTCACGATGATCGCGACCGGCAT 54082 | ||| | || || || || || |||| ||||||||| ||||| |||| ||| || Sbjct 6165 CACCTACATGGCCCATGCGGTGGGGTCGGGGAAGACGTTCTCGATGTGCGCGGCCGTGAT 6106 Query 54083 GGAGGAGCGCCGGCTGGGCCTGTCCAACAAGCCGATGTACGCGGTGCCGAACCACATGCT 54142 |||| | || || || ||| |||| ||| || ||||||| ||| || Sbjct 6105 GGAGCAAAAGCGCCTCGGTCTGATTTCCAAGGGCATGATCGTGGTGCCGGGACACTGCCT 6046 Query 54143 GGCGCAATTCGCGCGCGAGTTTCTTGA-GCTGTACCCGGCCGCGAACATCATGGTCGCGG 54201 ||||| | ||||| ||||| | ||| ||| |||||| ||| | ||| | || |||| Sbjct 6045 TGCGCAGATGGCGCGTGAGTT-CATGATGCTCTACCCGAACGCCCAGATCCTCGTGGCGG 5987 Query 54202 ACGAGCAGAATTTCCACACGCACAACCGCCGCCGGTTCGTCGCGCAGGCCGCGCTCAACA 54261 ||||| || ||| | | |||| |||| |||||| | || | ||| || | Sbjct 5986 ACGAGACCAACTTCGTGAAGGACAAGCGCCAGCGGTTCCTGGCCCGGGCGGCCACGGGGA 5927 Query 54262 ACCCGGACGCGATCATCATCACGCACTCGGCGTTC--GGTCGCATCGG-CATGTCCGACG 54318 || |||||| || |||||||||| || ||| | ||| ||| | | || | Sbjct 5926 ACTGGGACGCCATTGTCATCACGCATGACGCCTTCAAGTTCGTGCCGGTCGAGAGCGCC- 5868 Query 54319 AGTATGCGTCGCAGTTCATCAGCGACCAGATCGACGAGTGGAAAACCGCGCTCGCCGAGA 54378 | || | | || | || |||||||||| | ||| | || | | Sbjct 5867 --TTTGAGCAGGAGATGGTCGAGGACCAGATCGCGTCCTACGAAAGCCTTCTGGAGAACG 5810 Query 54379 CGGACAAGAGCGACCGCATCACGCGTAAGCAGATCGAGCGCCGTATCGAGCAGCTCGAAC 54438 | || | ||||||| | |||| |||| |||||||||| | ||| | | ||| Sbjct 5809 TGAACCGGGACGACCGCCTGTCGCGCAAGCGCATCGAGCGCCTGAAGGAGGGGATGGAAG 5750 Query 54439 GCCGGCTGGAGGCAAAGCAGGGCAACGAGAAGAAGGACAAGGTGCTGTCGTTCGAGGAGC 54498 |||| |||| | | || | ||| | || |||| || ||| ||| Sbjct 5749 TGAAGCTGAAGGCC---CTGTCCAGCCGCAAGGACGATCTCGTGCA-TC--TCGGCGAGA 5696 Query 54499 TGGGCGTCGACCGCCTGTTCGTCGACGAGTTCCACGAATTCCGCAAACTCGACTTCGCGA 54558 | || || |||| | |||| |||||| || | ||||||||||| |||| | Sbjct 5695 TCGGGGTGGACCAGATCCTCGTGGACGAGGCGCAGCAGTTCCGCAAACTGTCTTTCGGCA 5636 Query 54559 CGCAGCAGGGCAACATCAAGGGCATCGACCCGGCCGGCTCGCAGCGCGCGATGGACCTGT 54618 || | ||| | | | ||||| ||||||||| |||| |||||||| ||| |||| Sbjct 5635 CGAACCAGTCCGATCTGAAGGGGATCGACCCGAACGGCAGCCAGCGCGCCTGGGATCTGT 5576 Query 54619 TCATGAAGGCGCAATACCTGCGCTCGAAG---AAGCCGGGCCGCGCGCTCGTCGCCGCGT 54675 || |||| ||| ||||| | | ||| || || | |||| ||| || |||| Sbjct 5575 TCGTGAAAACGCGCTACCT---CGCAAAGCGTAATCCCGAGCGCGTGCTGGTGATGGCGT 5519 Query 54676 CGGGCACGCCGATCACGAACACGATGGGCGAGCTGTTCACGGTGCAACGCTTCTTCCAGC 54735 | ||| ||||||| || ||||| |||||||| ||||| || | || || ||| | | | Sbjct 5518 CAGGCTCGCCGATTACCAACACCCTGGGCGAGATGTTCTCGATCCAGCGGTTCATGGATC 5459 Query 54736 -CCGAGCAGATGGCCGAGGACGGTCTGGACACGTTCGACGCGTGGGC 54781 | ||| | | | |||| |||||| || ||||||||| ||||| Sbjct 5458 TGCCAGC-GCTTGTCGAGCGTGGTCTGCACGAGTTCGACGCCTGGGC 5413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200498781231144