Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq24486 132 1e-25 seq20348 127 5e-24 seq25099 113 1e-19 seq14047 102 2e-16 >seq24486 Length=213816 Score = 132 bits (146), Expect = 1e-25 Identities = 166/227 (73%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| | ||||||||||| |||| ||||||||| | || ||| Sbjct 88365 CGCAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 88306 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || |||||||| |||||||| || || || |||||| Sbjct 88305 CGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGAATTCCC 88246 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || ||||| Sbjct 88245 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACCTCCAAG 88186 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| ||||| || || | |||||||| || ||||| |||||| Sbjct 88185 GTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTG---CATTTT 88142 >seq20348 Length=30608 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | || ||||| ||||||| ||||| || | | ||| Sbjct 12913 CGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTG 12854 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||| ||||| ||||| | |||||| || || ||| ||||||| Sbjct 12853 CGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCT 12794 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| || || ||||| ||| || | | ||| || || | Sbjct 12793 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGA 12734 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||||||||| ||||| || || ||||| Sbjct 12733 GTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTG 12696 >seq25099 Length=83779 Score = 113 bits (124), Expect = 1e-19 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| ||||| | ||| || |||||||| || || | ||| || |||| | || Sbjct 21196 TCGGAGTCGGAGGACCAAGTGAAGGGTCGACTCTTTCTGAATGTTATAATCAGAAAGGGT 21255 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| ||||||||||| ||||||||||||||||||||||| || ||| ||||| Sbjct 21256 GCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGGATTCC 21315 Query 199528 TTCTCGCTCCTGAATCTT--TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCC 199585 ||| || || ||||| |||||| || | ||| || | | |||||| ||| Sbjct 21316 TTCCTTATCTTGGATCTTGGCCNCTTCACATTCTCAATGGTATCAGAAGGTTCTACTTCC 21375 Query 199586 AACGTGATCGTCTTACCCGTGAG 199608 | ||||| ||||| || || || Sbjct 21376 AGGGTGATGGTCTTTCCGGTCAG 21398 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||| || || | ||| || || |||||||| |||| || ||||| | |||||| Sbjct 22495 CGGAGTCTGAGAACCAAGTGCAGTGTTGACTCCTTCTGGATATTATAGTCGGACAAAGTG 22554 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| ||||||||||| || |||||||| ||||||||||| || || Sbjct 22555 CGACCATCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCTGG 22604 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | ||| ||||| |||||||| |||| || ||||| | |||||| Sbjct 20937 CGGAGACGCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGACAAAGTA 20996 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| ||||| ||||| || || ||||||||||||||||| || || Sbjct 20997 CGACCATCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCTGG 21046 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||||| | |||||| || |||||||| |||| || ||||| | |||||| Sbjct 22870 CGGAGTCGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTATAGTCTGACAAAGTA 22929 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGA 199504 | ||||| ||||||||||| || |||||||||||| Sbjct 22930 CGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGA 22965 >seq14047 Length=15719 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||||| | ||| || ||||| |||||||| | ||||| || | | ||| Sbjct 15691 CGTAGTCGGAGGACCAAGTGAAGTGTCGATTCCTTTTGAATATTGTAATCTGAAAGAGTG 15632 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||||||||| ||||||||||| || || |||||| Sbjct 15631 CGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCT 15572 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCAC 199554 ||| || || ||||| |||||| Sbjct 15571 TCTTTGTCTTGGATCTTGGCCTTCAC 15546 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||||| | |||||| || |||||||| |||| || ||||| | |||||| Sbjct 14643 CGGAGTCGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTATAGTCTGACAAAGTA 14584 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || |||||| ||||||||| || || ||||| Sbjct 14583 CGACCATCCTCCAGCTGCTTGCCAGCGAAG----NACGCTGCTGATCTGGGGGGATTCCC 14528 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCAC 199554 || || || ||||| |||||| Sbjct 14527 TCCTTGTCTTGGATCTTAGCCTTCAC 14502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178523524595718