Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq19105 324 1e-83 seq24486 158 1e-33 seq26131 84.2 2e-11 >seq19105 Length=237168 Score = 324 bits (358), Expect = 1e-83 Identities = 571/825 (69%), Gaps = 8/825 (1%) Strand=Plus/Plus Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 |||||||| ||||| || ||||| || || || ||||| || ||||| || || | | | Sbjct 36625 TGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCTCC 36684 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGC 132726 || || || || || ||||||||| |||| || || || || | || Sbjct 36685 ATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACGCCAAGCTCAACCAATAGG 36744 Query 132727 CTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGC 132786 | || || || |||||||| |||| ||||| | || || | || | || Sbjct 36745 CGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAGTTG 36804 Query 132787 ACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCC 132846 || |||||||| |||||||| || ||||| || | || || || || | |||||| Sbjct 36805 ACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGATTTCA 36864 Query 132847 CTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAA-GCAAAGTC 132905 | | ||| || || ||||| ||||||||||| | |||||| ||||| |||||||| Sbjct 36865 ATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT-AAGCACCGCAAAGTC 36923 Query 132906 GCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAG 132965 ||||||| || || || | || || | ||||||| ||| || | || ||||| || Sbjct 36924 ACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGCATAAG 36983 Query 132966 GCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGAC 133025 || || || || ||||| || |||| || || || || ||||||| ||| || || Sbjct 36984 TCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCTTCAAC 37043 Query 133026 GGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAG 133085 || || ||||| | | || || || || |||| | || | |||||| || Sbjct 37044 AGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGATCCAAGAAAG 37103 Query 133086 CGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAG 133145 ||||| || ||||| || || |||||||||||| ||||| || || | | || Sbjct 37104 AGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAAGAGAT--AG 37161 Query 133146 TTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGT 133203 | || || ||||| | | | |||||||| ||||| |||||||| || || Sbjct 37162 TCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTCGGAATGC 37221 Query 133204 ACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCT 133263 || ||||||||||| || || ||||| |||||||| || |||||| ||||||||||||| Sbjct 37222 ACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTGCACTTCT 37281 Query 133264 TGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCC 133323 || ||||| ||||||||||||||||| || || || || || || || |||||| Sbjct 37282 TGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAAGAAGGCC 37341 Query 133324 AGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC-GCTCCCAGTCGCGCGTGTC 133382 | ||| ||| |||||||| ||||| || || | |||| |||| || | |||| Sbjct 37342 AACACATGCGATATGAAATGACGCTCATTATCCGT-AAGCTTGGCCCAATCAGTCATGTC 37400 Query 133383 CTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 ||||||||| ||||| || ||||||||||| ||||| || || || Sbjct 37401 CTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGC 37445 >seq24486 Length=213816 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| ||||| | || ||||| ||||||||| | || || ||| || Sbjct 88142 AAAATGCAAATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCC 88201 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| |||||||||||| | || Sbjct 88202 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGAT 88261 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| || || | ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 88262 CAACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 88321 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| |||| |||| |||||||||||| || | || || Sbjct 88322 AACATCCAGAAGGAGTCGACCTTGCACTTGGTGCTGCGTCTGCGTGGTGG 88371 >seq26131 Length=1848992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 213/322 (66%), Gaps = 9/322 (3%) Strand=Plus/Plus Query 107500 CGCCCGAGTTGCCGGTGGTCTTGCTCAACGGATGGTCGGTGAGGCCCAGATCGTCCCTGT 107559 |||| | ||||| || |||||||||||| ||| | ||| ||||| || | Sbjct 1717267 CGCCAGCATTGCCAGTTGTCTTGCTCAACTCGTGGCCACCCTTGCCAAGATCATCGGCAT 1717326 Query 107560 CCGTGTGCACGACCAGACTCCGTCCGATGATGCTGTGCGGGCCGTACAAAGTCACGACGC 107619 | | || || || | | | ||||| |||||||||| | ||| | | ||| | || Sbjct 1717327 CGGCATGGACCACAACAGTGCGTCCAATGATGCTGTTCTCGCCAAAGAGAGTTATCTGGC 1717386 Query 107620 CGTCCGTCAAGCTCACCTCGGTGAGCGCGTCGCGGCCCGCCGACTTGAGGTTGCCCAGGT 107679 ||| || | | || | ||| | |||||| || |||| ||| |||||||| | Sbjct 1717387 TGTCGGTGATGTCGACTGCAGTGGGACCGTCGCCGCTGGCCG---TGATGTTGCCCAAAT 1717443 Query 107680 CGCCGACGTGCCTGATCTCGGCGTC---GGGCGCGCCGTGGTCGCGCTTCGTCGGGTTGA 107736 |||| | ||| | ||| |||| ||| || ||||| || ||| ||||||| Sbjct 1717444 CGCCCAAGTGGCG---CTCACCGTCTGTGGGTGCACCGTGCTCCTTCTTGTGGGGGTTGA 1717500 Query 107737 AATGCTCGCCGGCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACTCGTGCACGTGGAAGC 107796 |||| || | ||| |||| |||||| | |||||| ||||| ||||||||||| | Sbjct 1717501 AATGGGGTCCTGATGACATGCATCCGTTGGTGTTGTCGCCAAACTCATGCACGTGGAATC 1717560 Query 107797 CGTGCAGGCCGCGCGGCAGGCC 107818 | ||||| || ||| ||| || Sbjct 1717561 CATGCAGACCTTGCGCCAGACC 1717582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500008030575360