Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq13822 129 7e-25 seq19105 125 8e-24 >seq13822 Length=124548 Score = 129 bits (142), Expect = 7e-25 Identities = 342/516 (66%), Gaps = 30/516 (6%) Strand=Plus/Plus Query 11490 CACCTGAATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGAC 11549 |||| || || ||| || ||||| || || || || ||||| || || | || Sbjct 47535 CACCACAACCTGACGGTCAAAACGGCCGGGACGCAGCAGAGCCGGGTCCAGCACGTCCGG 47594 Query 11550 ACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTC 11606 |||||| || |||||||| | | | ||| ||||||| || || |||||||| || Sbjct 47595 ACGGTTGGTCGCGGCAATCAGGATCACGCC---CTCATTGCTTTCAAACCCGTCCATCTC 47651 Query 11607 TGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA---CCTGC 11663 || | |||||| | |||||| ||||||||||| || | |||| || || Sbjct 47652 GACCAGCATCTGGTTCAGCGTCTGCTCACGCTCATCATTCCCGCC---ACCAAGGCCCGC 47708 Query 11664 CGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGG----- 11718 ||| | || || |||||||| || || ||||| | ||| ||||| | Sbjct 47709 GCCACGATGGCGGCCCACGGCGTCAATTTCGTCAATGAAGATGATGCACGGCGCGGCCTT 47768 Query 11719 TTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATC 11778 || || |||| ||||| | ||||| || || ||| |||||||| || ||||| Sbjct 47769 TTTGC-----CCTGCTCGAACATGTCACGCACGCGGGACGCACCAACACCGACAAACATT 47823 Query 11779 TCAACGAAGTTTGCGGCAGAACAC-TGAATGAAGGGAACATTAGACTCACCAGCGATGGC 11837 || || |||| | | ||| |||| ||| || ||||| | |||||| || ||||| Sbjct 47824 TCCACAAAGTCAGACCCGGAAATGGTGAA-GAACGGCACATTGGCCTCACCCGCAATGGC 47882 Query 11838 TCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGAT 11897 || || || || ||||||||||| || || | || | |||||| |||| |||||| Sbjct 47883 ACGCGCCAGCAGGGTCTTACCCGTGCCCGGAGGCCCGACCAGAAGGACGCCCTTGGGGAT 47942 Query 11898 CTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTC 11954 ||| |||| || ||| | || || | || |||||||| ||||| |||| Sbjct 47943 TTTGCCACCCAGACGGGTAAATT---TCTGCGGGTCTTTCAGGAAGTCGACAATTTCCTG 47999 Query 11955 AAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATC 11990 ||| || ||||||| || || ||| ||||||| Sbjct 48000 AAGCTCACCCTTGGCTTCATCAATCCCCGCAACATC 48035 >seq19105 Length=237168 Score = 125 bits (138), Expect = 8e-24 Identities = 527/814 (65%), Gaps = 21/814 (3%) Strand=Plus/Plus Query 119207 ATAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCAT 119266 ||| |||||||| |||| |||||||| || || || ||||| | ||||| | ||||| Sbjct 36627 ATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCTCCAT 36686 Query 119267 AAAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGAC 119325 || || ||||| || | ||| | || | | | |||| | || || | Sbjct 36687 GAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACG-CCAAGCTCAACCAATAGGC 36745 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 |||| | |||| |||||||||||||||||||| | | ||||| || || | || Sbjct 36746 GATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAGTTG- 36804 Query 119386 ACGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGG-A 119443 ||||| || |||||| || ||| | || ||| || |||||| || | | ||| | Sbjct 36805 ACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGATTTCA 36864 Query 119444 GTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTC 119503 ||| ||| | | | | || | ||| ||| |||| || ||||| || Sbjct 36865 ATGATGCGTTCCCGACTA-GGCCGCTGCACCAAATGTTGGAACATAAGCACCGCAAAGTC 36923 Query 119504 TTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAG 119563 ||| || |||||||| |||||||| | || || ||| |||||||||||| || Sbjct 36924 ACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGCATAAG 36983 Query 119564 TCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCAC 119623 ||| | ||||| ||||| ||||||| ||| || ||| ||||||||||| || || Sbjct 36984 TCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCTTCAAC 37043 Query 119624 ACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCG-AGACTTGTCGAA-----CCACTT 119677 | || ||||| | | ||| ||| | |||| | | || || ||||| ||| Sbjct 37044 AGCAGCAAAAGCAATAATACGTTCA-CCAAAGTTGGCAGCCT--TCGAAGAGATCCAAGA 37100 Query 119678 GAGAGCCCAGTTGGCCTTACGCTCTATGCAG--GGGACAGTTTGGATGGCTTCGAAAAGT 119735 |||||||||| ||||| |||| || ||| || | |||| ||||| | ||| || Sbjct 37101 AAGAGCCCAGTCTGCCTTCCGCT-TA-ACAGCCGGCATCGTTTCAATGGCATTGAAGAGA 37158 Query 119736 TGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCA 119795 | | | | | |||| | ||||| | |||||||| | ||| | || | Sbjct 37159 TAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTCGGAA 37218 Query 119796 TGAACCATTTCATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACT 119855 || || | || || ||| || ||||||| | || || |||| | |||||| Sbjct 37219 TGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTGCACT 37278 Query 119856 TCGTCAGCAAAATTGTT-GTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAA 119914 || | || ||| ||| | | |||||| |||||||||||| || |||| ||||| Sbjct 37279 TC-TTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAAGAA 37337 Query 119915 TGCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCAT 119974 || || | | | |||||| | | |||||||| | || | ||| || ||| Sbjct 37338 GGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGTCAT 37397 Query 119975 ATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAG 120008 || || |||| ||||| ||||| | |||||| Sbjct 37398 GTCCTTGGACAGATCCACTTCTTCGACGGTCCAG 37431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588781976581200