Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq20348 158 3e-33 seq25099 138 3e-27 seq14047 120 7e-22 >seq20348 Length=30608 Score = 158 bits (174), Expect = 3e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||||||||| ||||||||||||| |||||| | ||||||||| | ||||| || Sbjct 12889 GTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGCTTGCCG 12830 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | || ||||| ||||||||||| ||||||||||| ||||| || ||| Sbjct 12829 GCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 12770 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || ||||| ||||| ||| || ||||| || | ||||| || || | ||| Sbjct 12769 ACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTT 12710 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 12709 TTAACGAAGATTTGCAT 12693 >seq25099 Length=83779 Score = 138 bits (152), Expect = 3e-27 Identities = 152/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| | || | |||||| || |||||||| ||||| || ||||| | ||| || Sbjct 21196 TCGGAGTCGGAGGACCAAGTGAAGGGTCGACTCTTTCTGAATGTTATAATCAGAAAGGGT 21255 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || |||||||| || || || || |||||||| || || Sbjct 21256 GCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGGATTCC 21315 Query 195039 TTCTTTGTCTTGAATTTTTT--GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 ||| || ||||| || || ||| || ||||||||||| || ||| ||| ||||| Sbjct 21316 TTCCTTATCTTGGATCTTGGCCNCTTCACATTCTCAATGGTATCAGAAGGTTCTACTTCC 21375 Query 195097 AGGGTAACCGTCTTTCCTGTCA 195118 ||||| | |||||||| |||| Sbjct 21376 AGGGTGATGGTCTTTCCGGTCA 21397 >seq14047 Length=15719 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || || ||||||||||||||||| | |||||| | ||||| || ||||| Sbjct 15674 GTGAAGTGTCGATTCCTTTTGAATATTGTAATCTGAAAGAGTGCGACCATCCTCCAGCTG 15615 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||| || || |||||||||||||| || || Sbjct 15614 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGGATCTT 15555 Query 195057 TTGCTTGACGTTCTCA 195072 ||| || |||||| Sbjct 15554 GGCCTTCACATTCTCA 15539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109106971749518