Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq19105 244 1e-59 seq25128 206 3e-48 >seq19105 Length=237168 Score = 244 bits (270), Expect = 1e-59 Identities = 561/838 (67%), Gaps = 10/838 (1%) Strand=Plus/Plus Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720 |||||||| |||||||| | ||| | || || ||||| || ||||| || || || Sbjct 36613 ACTCCCATGCGCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAA 36672 Query 18721 GATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA 18779 || || ||| ||||| || |||||||| ||| || || || || | || | Sbjct 36673 GAGAT-CATCTCCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACGCCAAG 36731 Query 18780 TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCAT 18839 || | | ||| | ||| || ||||| | |||||| | ||||| | |||| ||||| Sbjct 36732 CTCAACCAATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCAT 36791 Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899 || || || || || || || ||||| || || || || || || ||| | || || || Sbjct 36792 GCCAATCAAGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATC 36851 Query 18900 TGATATAATAGATACAACTCTATCTTC---ATTAGGAGGGTATAGAAGATGTTTAAACAT 18956 | ||| || | ||| | ||| | |||| | | | | ||||| ||||| Sbjct 36852 CGTTATGAT---TTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT 36908 Query 18957 CAAACAT-GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATG 19015 || || ||||| |||||||| || || || || | | |||||||| || || |||| Sbjct 36909 -AAGCACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATG 36967 Query 19016 TTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAA 19075 | | |||||||| ||||| | || || | |||||| || || ||||| ||| | Sbjct 36968 TAAGTCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGA 37027 Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT 19135 |||| || ||||| || || |||||||||| | | ||| ||| | | ||| | || Sbjct 37028 AGAAGATGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCG 37087 Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195 | ||||| || ||||| || |||||| || ||| ||||| || || || | Sbjct 37088 AAGAGATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGG 37147 Query 19196 AATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGT 19255 ||| || ||||| |||| || | ||| | | ||| | || || | | ||||| Sbjct 37148 CATTGAAGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGT 37207 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 ||||||| ||||| | ||| || || || ||||| || || ||||| || | ||| || | Sbjct 37208 ACATTTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGG 37267 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 | | ||| ||||| | ||| | |||||||| |||||| ||||| ||||||||| || Sbjct 37268 TCACCTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAG 37327 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC 19435 | ||||| || || || ||||| || ||||| |||| || | | || Sbjct 37328 CAGCAAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCC 37387 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||||| | || || || || | ||| |||||||| || ||||| || || || || || Sbjct 37388 AATCAGTCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGC 37445 >seq25128 Length=30855 Score = 206 bits (228), Expect = 3e-48 Identities = 1150/1843 (62%), Gaps = 16/1843 (1%) Strand=Plus/Minus Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063 |||| ||||| || | ||||||||| || ||||| | ||| |||| ||||| Sbjct 20166 GCTGGCTTTGTGCGCAGATAATACATTCCTGTCTTGAGGCCTGCCTTCCACGAGAAGAAA 20107 Query 47064 TGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTC 47123 || || ||||| || || | ||||| | || ||||| || | ||||||||| Sbjct 20106 TGAATGGATGTTAACTTGCCGTAGTTGGGTTCGGCAACGTGAATGTTGAATGATTGACTC 20047 Query 47124 TGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCC 47183 || |||||||| ||||| | |||||||||||| | | | | | | || ||| Sbjct 20046 TGGTCAATAAAAGCACCGCGATCAGCTGCCATCTTGATGGTTGACTTCACCGAGATTTCC 19987 Query 47184 CATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA--GATTAG-TATTTTGAATAGAT 47240 || || ||||| |||| | | || | || | |||| | | ||||| || || Sbjct 19986 CAGACGGTTTTGTAAAGATCCCGTACTTCCTGAGGAATGGATTCGATGTTTTGTATGGAG 19927 Query 47241 CCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaat 47300 || | | | || |||| || || | |||| ||| | | |||| ||||| Sbjct 19926 CCACGACTGGCAATGATTTGATTCTTCATGTCATCATCCCATAAATCCAGTTCGGTTAAA 19867 Query 47301 gtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATAT 47360 || | |||| |||| || | | || ||||| || | || | | | | || Sbjct 19866 TCCCGCAACAAATGATGATTTACCACATTGAACTCTCCGGACAAAACGCGCCTGGTGTAA 19807 Query 47361 ATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCT 47420 || || ||||| || || | || |||||||| || | || || ||||| ||||| Sbjct 19806 ATGTTTGAAGTATACGGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCC 19747 Query 47421 GTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNNNNNNN 47479 || ||||| | || || || ||| | ||||| || |||| | || || | Sbjct 19746 GTGGGCATTGGAGCCAC-AAGCAGCGAGTTTCTAACGCCATGCTCTTTGATTTTCAATTT 19688 Query 47480 NNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 ||||||||||||| | || || | ||| | ||| || || ||||| Sbjct 19687 TAGAGCAGTCCAATCCCAAAGGTTTGTGGGTGTCTTGTCCCACATATCGTACTGCAGAAT 19628 Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 ||| || || | |||| ||||| || |||| ||| ||||||| || ||| || || Sbjct 19627 TCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTC 19568 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAG-ATTCC 47658 |||||| || || | |||| ||| || || ||||| || || | || || | | | Sbjct 19567 ACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATAC 19508 Query 47659 TTGCTTCTGATGAT-TCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGA 47717 |||| || | ||| | ||| | || | || || || || ||| Sbjct 19507 G-GCTT-TGTCACTCTCATAGGGAAAGCGCATCAGAATTAAGGCGTCGGCAAAGCCCTGA 19450 Query 47718 ACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATAT 47777 || ||||| ||||| || | ||| || ||| || || || || || | ||||| Sbjct 19449 ACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGCAGCGGATAG 19390 Query 47778 TTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAAT 47837 | || ||||| || ||||| || | | || ||| ||| | Sbjct 19389 TAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTTAGT 19330 Query 47838 TTATTAAAATCAAACTTGTTATTTATA---ACAAACCTATTAAGTGCTATAGATGCTAGA 47894 || || ||||| || | || | | | |||||| |||| | ||||| ||||| | | Sbjct 19329 TTCTTGAAATCGAATGTTTTCTCTGAAGTCACAAACATATTCAAGGCTATCGATGCCAAA 19270 Query 47895 TTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCA 47954 || || || || | ||||| || | ||||| | ||||| | || || || | Sbjct 19269 TTGCAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCGGTGCAGAGGTTGCTG 19210 Query 47955 CATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGC 48014 |||||||| || || | ||| || ||||| | |||| || | ||| ||| | ||| Sbjct 19209 CATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGAAGAGC 19150 Query 48015 ATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCC 48074 || | || || ||||| || | |||||||||| || | | ||||| ||| || Sbjct 19149 ATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAAGAGTTTGTGCT 19090 Query 48075 TTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCA 48134 || || ||| | || | || || || || ||||| | ||||||||| ||| Sbjct 19089 TTAATCACACGATTTGCGCGACCCTCGCTCTCATACTTTGTATACAGCTTCTCAAAGTCA 19030 Query 48135 TCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCA 48194 ||||| | || | || || || ||||| | | |||||||| || |||||||||||| Sbjct 19029 TCCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCA 18970 Query 48195 TCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTA 48254 | || || | ||||||| | ||| |||||||| | || || | ||| | | Sbjct 18969 TTGGCTTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTAGAAGAGATCACGA 18910 Query 48255 GTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCA 48314 | ||| | ||||| ||||| | ||| |||| || || | || || | ||||| | | Sbjct 18909 GCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAA 18850 Query 48315 TGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATA 48374 ||||| ||||| | || || || | | ||||| || || || |||||||| | | Sbjct 18849 TGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGCCGCTTGCCGCCACCTTGATCGACA 18790 Query 48375 TATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTG 48434 || | || ||| ||| | ||||| | ||| || || | ||||||||| | ||||| Sbjct 18789 TAACGAGCCACATTATTAAACACTCTGAGCATGGGCACCAAACCATTTGAAGTGCCATTA 18730 Query 48435 GTTCCCGAAATATAACTTCCACTAGCTC--TTATATTACTAATTGAAATACCTATACCAC 48492 || || | || | | || | || | || | | | |||| | || || |||| Sbjct 18729 GTGCCACAGATCGAGGTGCCCTTGGCACGAATACAATGCACATTG--AGTCCAATGCCAC 18672 Query 48493 CTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTAT 48552 | || ||| || || | |||||| | | | || | |||| ||||| || || Sbjct 18671 CAGCGGATTTGGAGATCATTGCACACTGCTCGACGGACTTGAAAATGCCTTCGATGGAAT 18612 Query 48553 CATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAA 48612 | | ||| ||| || ||||| ||||| || ||| || || | | | || Sbjct 18611 CGGAAACCATTGTTAGAAGGAAACACGATGACATCTGGGGACGATTGGTGGCAGCAGCAA 18552 Query 48613 ATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAA 48672 ||| ||||| |||||||| |||| | || ||||||| || || || || | | Sbjct 18551 ATAGCGTTGGCGATGCATGCGTAAAATAGCGTTCCGATAACAGATTGTAAGTCTCGACAG 18492 Query 48673 CAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTC 48732 | ||||| || || ||| || || || | || | ||| | ||| | || || | Sbjct 18491 CGGAATCGATGTCTTCGCCATGGATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGAC 18432 Query 48733 TTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAA 48792 ||| | |||||| ||| || || | | ||| || || | || || || |||| Sbjct 18431 GTTCGGCGATTTTGCCATTGATCTTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAA 18372 Query 48793 AATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 |||||||||| ||| || ||||| || || | ||| || Sbjct 18371 AATAGTTGTAGCCAAAATCACGATCATAGATGATCGCTGAGTT 18329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561923627308560