Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq22981 125 6e-23 seq18360 111 1e-18 seq20348 95.1 1e-13 >seq22981 Length=4323 Score = 125 bits (138), Expect = 6e-23 Identities = 363/551 (66%), Gaps = 12/551 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| ||||| || || || ||||| || || || ||||| | || | || || Sbjct 3635 GCTATTGGTATTGACTTGGGCACCACGTACTCGTGCGTCGGTGTGTTCCAGCACGGCAAG 3576 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || ||||| || || ||||||||||| || || ||||| | ||||| Sbjct 3575 GTGGAGATCATAGCCAACGACCAGGGTAACAGAACGACGCCCAGCTATGTGGCATTCACA 3516 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACC 550168 || | || || | || || || || || | |||| ||| || ||||| | Sbjct 3515 GACTCGGAGAGGTTGATCGGAGACGCGGCCAAGAACCAAGTGGCCA-TG--AATCCAAAG 3459 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || | | | || ||||| |||||||| |||||| | | || |||| |||| ||||| Sbjct 3458 AACAGTCTGTTCGATGCGAAACGTTTGATTGGACGCAAGTTCGATGACTCGAAGATTCAG 3399 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 | ||||||||||| ||||| |||||| | || || | | ||| || || | || Sbjct 3398 GAGGATATGAAGCACTGGCCATTCCAAGTGGTCAACGACTGTGGCAAGCCAAAGATGAGC 3339 Query 550289 GCT--ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | | ||| | ||| | | || | |||| | || || | || || ||||| Sbjct 3338 GTTGAGTTCAAGGGGGAGCAG--AAGCGATTTGCCCCTGAGGAGATCAGCTCAATGGTGC 3281 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTA 550405 | | || ||||| | ||||| || | | ||| || | | | || || | Sbjct 3280 TCACCAAGATGAAGGAGACAGCTGAGGCGTAT-CTGGGCAGCTCGATCAAAGACGCGGGG 3222 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || || || ||||| ||||| || || || || || || ||||| ||||||||||| Sbjct 3221 ATCACAGTGCCAGCGTATTTCAACGATTCGCAGCGGCAGGCTACGAAAGATGCTGGTGCC 3162 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 |||||||| | ||||| || || ||||| |||||||| || || || || || || ||| Sbjct 3161 ATTGCTGGGTTGAATGTGCTGCGCATTATAAATGAACCGACAGCGGCAGCTCTGGCCTAT 3102 Query 550526 GGACTTGATAA 550536 || || || || Sbjct 3101 GGGCTGGACAA 3091 >seq18360 Length=14482 Score = 111 bits (122), Expect = 1e-18 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || || || || ||||| ||||| |||||||| || ||||| || || ||||| Sbjct 6526 GGATGCCGTCATCACAGTGCCAGCTTATTTCAATGACTCGCAGCGTCAGGCAACCAAAGA 6467 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| ||| |||||||| || ||||| || || ||||||||||| || || || ||||| Sbjct 6466 TGCCGGATCCATTGCTGGCCTAAATGTGCTGCGCATTATCAATGAGCCGACAGCAGCTGC 6407 Query 550516 ACTTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 6406 TTTGGCCTATGGCCTGGACAA 6386 >seq20348 Length=30608 Score = 95.1 bits (104), Expect = 1e-13 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 563280 ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGC 563339 ||| | ||||| ||||||||||| | ||||| | |||||| | ||| || ||||| Sbjct 12885 ACTCTTTTTGG--ATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGCTTGCCGGC 12828 Query 563340 AAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTAC 563399 ||| || | | || ||||| ||||||||||||||||| || ||||| || ||| || Sbjct 12827 AAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGAC 12768 Query 563400 TGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTT 563457 || || ||||| | || | || || ||||| | || ||||| || || ||| Sbjct 12767 ATTTTCGATGGTATCCGACGGTTCG-AC-CTCAAGAGTGATGGTCTTACCCGTGAGGGTT 12710 Query 563458 TTAACGAAAATTTGCAT 563474 |||||||| |||||||| Sbjct 12709 TTAACGAAGATTTGCAT 12693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027902281623460