Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq11774 197 5e-46 seq19300 192 2e-44 >seq11774 Length=7091 Score = 197 bits (218), Expect = 5e-46 Identities = 519/792 (66%), Gaps = 0/792 (0%) Strand=Plus/Plus Query 21737 TATGGCCTGTCAGGACAATTTGGCGTTCATGCGTCCGCTCAAGAGCGGCTCGATGCAGCT 21796 |||||| |||| | ||| || |||||||||||| | || || || ||| |||| Sbjct 2220 TATGGCAGTTCAGAATAATCTGAAATTCATGCGTCCGTTGAAAGATGGATCCATGAAGCT 2279 Query 21797 CGTCGTGACGTCGCCACCCTACAACATCGGCAAGAGGTACGAAAAGCGGTCGCCGCTGGA 21856 |||| || || || || || || ||||| || ||| || || || | | || || Sbjct 2280 AATCGTCACATCACCGCCGTATAATATCGGAAAAGCGTATGAGAAACGCACTACTCTTGA 2339 Query 21857 CGCCTACGTGCAGGCCCAGGCGCAGGTCATCTCCGAGTGCGTGCGGCTTCTCAGCCCGCA 21916 || || || | || | || || || | || || || || | || || Sbjct 2340 GAAATATGTTCAAGATCAAACTCAAGTAATAACAGAATGTGTACGTTTACTGGATGAGCG 2399 Query 21917 CGGCTCGCTCTGCTGGCAGGTCGGCAATCACGTGCAGAAAGGCGAGATATTCCCGCTCGA 21976 || || || || ||||| || || ||||| || ||||| || || ||||| || || || Sbjct 2400 TGGATCTCTTTGTTGGCAAGTTGGTAATCATGTTCAGAATGGTGAAATATTTCCACTAGA 2459 Query 21977 CACCGTGCTCTATCCGGTCTTTCGCGAGCACGGCCTGAAGCTACGGAATCGCGTGGTGTG 22036 || || || || | | || || || || || ||| |||| ||| | | | || Sbjct 2460 TACTGTTCTTTACCATATTTTCAAAGACCATGGTCTTAAGTTACGAAATAGAATTATTTG 2519 Query 22037 GCATTTCGAGCACGGCCTGCACTGTTCGAACCGCCTGTCCGGCCGCTACGAGACGATCCT 22096 |||||||||||| || |||| | | || | ||||| |||||||| || || || | Sbjct 2520 GCATTTCGAGCATGGATTGCATTCTAAAAATAGACTGTCAGGCCGCTATGAAACCATTAT 2579 Query 22097 CTGGTTCACCAAGACCGACGACTACGTTTTCAACCTCGACCCGATCCGGGTGCCATCGAA 22156 ||||| || || || || || || || || || ||||| || || ||||| || Sbjct 2580 GTGGTTTACTAAAGGAGATGATTATACATTTAATCTAGATCCGATACGTGTTCCATCAAA 2639 Query 22157 ATACCCCGGAAAGAAATACTTCAAAGGGCCGAAGGCTGGTCAGCTCTCCTGCAATCCGCT 22216 ||| || || ||||||| ||||| || || ||||| ||||| || | || || || Sbjct 2640 ATATCCAAATAAAAAATACTATAAAGGACCTAAAGCTGGGCAGCTTTCTGGAAACCCTCT 2699 Query 22217 GGGAAAAAACCCAGGCGACGTGTGGATTTTCCCCAACGTCAAGAACAACCACGTCGAAAA 22276 || ||||| || || || | ||||| || || || || || || || || || ||||| Sbjct 2700 AGGCAAAAATCCGGGTGATATTTGGATATTTCCAAATGTAAAAAATAATCATGTTGAAAA 2759 Query 22277 GACCGACCATCCATGCCAGTTCCCGGTCGAGCTGGTCGAGCGGTTGGTGCTGTCGCTGAC 22336 || ||||| ||||| || ||||| || | ||||| | | || || || | || Sbjct 2760 AACAATTCATCCTTGCCAATTTCCGGTTGAATTAGTCGAAAGACTTGTTCTTTCATTAAC 2819 Query 22337 CGAGCCCGGTGACGCGGTGCTCGACCCGTACATGGGCGTGGGCTCGTCGGTCGTCGCTGC 22396 || || || || | || ||||| ||||| || || || || | || || || Sbjct 2820 GGATGAAGGGGATAATGTTTTTGATCCGTATATGGGAGTCGGATCTTCAATAGTGGCAGC 2879 Query 22397 CCTCAAGCACGACCGCCTCGGGTACGGCTGCGACGTCGTGAAGGAGTACGTCGATGCCGC 22456 | ||| | | || | || || || ||||| || || || ||||| |||||| || Sbjct 2880 TATAAAGAATAATCGTATTGGATATGGGTGCGATGTTGTTAAAGAGTATGTCGATATAGC 2939 Query 22457 CTGGGAGCGCGTGCACCGGCTTCGCGCCGGCACACTCCAGACGCGCCCCATGCACAAGCC 22516 |||||| | || || |||| || ||||| || | || || || ||| | ||||| Sbjct 2940 TTGGGAGAGGGTTCATGACTTTCGAGCAGGCACTCTTGAAACTCGTCCTATGAATAAGCC 2999 Query 22517 CGTCTATGACCC 22528 ||||||||||| Sbjct 3000 AGTCTATGACCC 3011 >seq19300 Length=4712 Score = 192 bits (212), Expect = 2e-44 Identities = 409/611 (67%), Gaps = 0/611 (0%) Strand=Plus/Plus Query 21918 GGCTCGCTCTGCTGGCAGGTCGGCAATCACGTGCAGAAAGGCGAGATATTCCCGCTCGAC 21977 || || || || ||||| || || ||||| || ||||| || || ||||| || || || Sbjct 742 GGATCTCTTTGTTGGCAAGTTGGTAATCATGTTCAGAATGGTGAAATATTTCCACTAGAT 801 Query 21978 ACCGTGCTCTATCCGGTCTTTCGCGAGCACGGCCTGAAGCTACGGAATCGCGTGGTGTGG 22037 || || || || | | || || || || || ||| |||| ||| | | | ||| Sbjct 802 ACTGTTCTTTACCATATTTTCAAAGACCATGGTCTTAAGTTACGAAATAGAATTATTTGG 861 Query 22038 CATTTCGAGCACGGCCTGCACTGTTCGAACCGCCTGTCCGGCCGCTACGAGACGATCCTC 22097 ||||||||||| || |||| | | || | ||||| |||||||| || || || | Sbjct 862 CATTTCGAGCATGGATTGCATTCTAAAAATAGACTGTCAGGCCGCTATGAAACCATTATG 921 Query 22098 TGGTTCACCAAGACCGACGACTACGTTTTCAACCTCGACCCGATCCGGGTGCCATCGAAA 22157 ||||| || || || || || || || || || ||||| || || ||||| ||| Sbjct 922 TGGTTTACTAAAGGAGATGATTATACATTTAATCTAGATCCGATACGTGTTCCATCAAAA 981 Query 22158 TACCCCGGAAAGAAATACTTCAAAGGGCCGAAGGCTGGTCAGCTCTCCTGCAATCCGCTG 22217 || || || ||||||| ||||| || || ||||| ||||| || | || || || Sbjct 982 TATCCAAATAAAAAATACTATAAAGGACCTAAAGCTGGGCAGCTTTCTGGAAACCCTCTA 1041 Query 22218 GGAAAAAACCCAGGCGACGTGTGGATTTTCCCCAACGTCAAGAACAACCACGTCGAAAAG 22277 || ||||| || || || | ||||| || || || || || || || || || ||||| Sbjct 1042 GGCAAAAATCCGGGTGATATTTGGATATTTCCAAATGTAAAAAATAATCATGTTGAAAAA 1101 Query 22278 ACCGACCATCCATGCCAGTTCCCGGTCGAGCTGGTCGAGCGGTTGGTGCTGTCGCTGACC 22337 || ||||| ||||| || ||||| || | ||||| | | || || || | || Sbjct 1102 ACAATTCATCCTTGCCAATTTCCGGTTGAATTAGTCGAAAGACTTGTTCTTTCATTAACG 1161 Query 22338 GAGCCCGGTGACGCGGTGCTCGACCCGTACATGGGCGTGGGCTCGTCGGTCGTCGCTGCC 22397 || || || || | || ||||| ||||| || || || || | || || || Sbjct 1162 GATGAAGGGGATAATGTTTTTGATCCGTATATGGGAGTCGGATCTTCAATAGTGGCAGCT 1221 Query 22398 CTCAAGCACGACCGCCTCGGGTACGGCTGCGACGTCGTGAAGGAGTACGTCGATGCCGCC 22457 | ||| | | || | || || || ||||| || || || ||||| |||||| || Sbjct 1222 ATAAAGAATAATCGTATTGGATATGGGTGCGATGTTGTTAAAGAGTATGTCGATATAGCT 1281 Query 22458 TGGGAGCGCGTGCACCGGCTTCGCGCCGGCACACTCCAGACGCGCCCCATGCACAAGCCC 22517 |||||| | || || |||| || ||||| || | || || || ||| | ||||| Sbjct 1282 TGGGAGAGGGTTCATGACTTTCGAGCAGGCACTCTTGAAACTCGTCCTATGAATAAGCCA 1341 Query 22518 GTCTATGACCC 22528 ||||||||||| Sbjct 1342 GTCTATGACCC 1352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197726901253332