Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq20348 158 1e-33 seq16702 122 7e-23 seq24486 102 6e-17 seq14047 91.5 1e-13 >seq20348 Length=30608 Score = 158 bits (174), Expect = 1e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 ||||| |||||||| ||||||||||||| | ||| | |||| ||||||||||| || Sbjct 12889 GTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGCTTGCCG 12830 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| ||||||||||||||||| || ||||| |||||||| || ||||| || ||| Sbjct 12829 GCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 12770 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| |||| | || || |||| ||| || |||||||||| || || || || | ||| Sbjct 12769 ACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTT 12710 Query 101453 TTTACAAATATCTGCATGGT 101472 || || || || ||||| || Sbjct 12709 TTAACGAAGATTTGCATCGT 12690 >seq16702 Length=433992 Score = 122 bits (134), Expect = 7e-23 Identities = 176/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 13655 AATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCC 13714 |||||||||||||| |||| | | ||||| | || || || || | || | |||||| Sbjct 196773 AATTTTCGTTTACATCCTTGATAGTTCATATAGCGAATCTTGCCGAATATGGCACGCTCC 196714 Query 13715 ATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGGA 13774 |||| || ||| || | || | | ||||||||||| || ||||||| |||||| Sbjct 196713 TTCCATGCGTTATCATGGATACCCCCGACAGACCACATGCAGCCCACATAACCATTGGGA 196654 Query 13775 TCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCC-ACTGT 13833 || || ||||||| ||||||||||||||| | ||||| | || ||| || | Sbjct 196653 TCACGGCCATCCAGACTGTATTTGTCGTTCAGCAATATGCTATACTCCAACGCCTGCTCT 196594 Query 13834 AGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGCAT 13893 || | | |||||| | ||| || || |||||||| ||||||| | |||| ||||| Sbjct 196593 -GGTGTTTCTGTCCATTCAAGTATCTTCTTGGCCCAATACATTCTCAGAAATCCATGCAT 196535 Query 13894 TTTGCC 13899 |||||| Sbjct 196534 TTTGCC 196529 >seq24486 Length=213816 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || | ||| || || || || || ||||| |||| | ||| | | |||| ||| Sbjct 88353 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 88294 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || |||| |||||||||||| || ||||| || || || || || Sbjct 88293 AGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGAATTCCCTCCTTGTCCTGG 88234 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | |||||||| | ||||| || | |||| || ||| Sbjct 88233 ATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACCTCCAAGGTGATGGTCTTG 88174 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || || || ||||| Sbjct 88173 CCAGTCAAGGTTTTCACGAAGATTTGCAT 88145 >seq14047 Length=15719 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || ||||| ||||| ||||||||||| | | ||| | |||| ||| Sbjct 15679 ACCAAGTGAAGTGTCGATTCCTTTTGAATATTGTAATCTGAAAGAGTGCGACCATCCTCC 15620 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || |||| |||||| ||||| || || || |||||||| ||||| Sbjct 15619 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGG 15560 Query 101381 ATTTT 101385 || || Sbjct 15559 ATCTT 15555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396151119588378