Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq17959 136 3e-27 seq20348 105 5e-18 seq24486 100 2e-16 seq14047 84.2 2e-11 >seq17959 Length=3161164 Score = 136 bits (150), Expect = 3e-27 Identities = 214/304 (70%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 9000 ACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTA-ACCTCTA 9058 ||| ||||| ||||| || ||||| ||||| ||||| || | || |||| Sbjct 1621209 ACCCGTTGAGCCAAAGCCACCCTCGCCGCGTACTGTGTCC-TCCAGTTTGTCGACCTGCT 1621267 Query 9059 CCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCA 9118 |||| |||||| ||||| |||| ||||| ||||| ||||| | || || |||| Sbjct 1621268 CCAGCTCGGGATAGAAGATGCGTTCGCAAATGAATTGGGCAATGCGATCACCACGCTTCA 1621327 Query 9119 CGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCT 9178 | | || || | || || |||||||||||||| || |||| || || | || |||| Sbjct 1621328 CCTCGAAATCGGCATCCGAGTGATTGAACAGCACAACACCCAGATTGCCGCGATAGTCCT 1621387 Query 9179 CATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCG 9238 |||| | || || || |||||||||||||||| ||| || || | |||||||| |||| Sbjct 1621388 CATCCACAACGCCGGCTCCCACGTCGATGAAGTTCTTCACAGCCAAGCCAGAGCGTGGCG 1621447 Query 9239 CGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCT 9298 | | || || ||| | ||| | || | ||| ||| ||| || ||| |||| | ||| Sbjct 1621448 CCACACGGCCATAGGAACCCTCTGGCACTTGGACCTGCAGATCTGTCTTGACAATGGCCT 1621507 Query 9299 TGCC 9302 |||| Sbjct 1621508 TGCC 1621511 >seq20348 Length=30608 Score = 105 bits (116), Expect = 5e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || | || ||||||||| ||||||||||| || ||| | || Sbjct 12910 AGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGC 12851 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| |||||||| |||| ||||||||||| | |||| || || Sbjct 12850 CCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCT 12791 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | || |||| || ||||| | || Sbjct 12790 TTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTG 12731 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || || ||||| | ||||| || || || |||||||| Sbjct 12730 ATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCATCGT 12690 >seq24486 Length=213816 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || | || ||| || || || ||||| || || ||| | || Sbjct 88362 AGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 88303 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || ||||| ||||||||||| | ||||| |||||| Sbjct 88302 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGAATTCCCTCC 88243 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 88242 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACCTCCAAGGTG 88183 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| ||||| || || || ||||| Sbjct 88182 ATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCAT 88145 >seq14047 Length=15719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | ||||| || || || || ||||||||||||||||| || Sbjct 15697 CCACCACGTAGTCGGAGGACCAAGTGAAGTGTCGATTCCTTTTGAATATTGTAATCTGAA 15638 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || |||| |||||| ||||| || ||||| ||||| ||||| | ||| Sbjct 15637 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 15578 Query 48660 ACGCCCTCCTTGTC 48673 | || || ||||| Sbjct 15577 ATTCCTTCTTTGTC 15564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380815246890342