Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq19105 214 3e-50 >seq19105 Length=237168 Score = 214 bits (236), Expect = 3e-50 Identities = 550/829 (66%), Gaps = 23/829 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || |||||| | ||||| |||||||| || || || ||||| ||||| |||| Sbjct 36624 CTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCTC 36683 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 |||||| ||| || || |||||| || | | || ||| | || ||| || Sbjct 36684 CATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACGCCAAGCTCAACCAATAG 36743 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | |||| ||||| ||||||| |||| ||||| || | ||||||||| || | | Sbjct 36744 GCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAGTT 36803 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||||| || | ||||| ||||||| ||| || ||| || ||| | || | Sbjct 36804 GACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGATTTC 36863 Query 48079 CTTAACGCGG----GACTCTGAGGGTTTGTTGCGC-AGGTGCTTGG--CATAGAGCATGC 48131 | | ||| |||| ||| | ||| | | || |||| |||| |||| Sbjct 36864 AATGATGCGTTCCCGACT---AGGCC--GCTGCACCAAATG-TTGGAACATA-AGCACC- 36915 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 |||||||| | |||| ||||| || || ||| | |||||||||| || | Sbjct 36916 --GCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTC 36973 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 ||||||| | || | || || |||||||| || | || || ||| |||||||| Sbjct 36974 CAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGA 37033 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 |||| || || || || || || | | | || || || || ||| |||| Sbjct 37034 TGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGA 37093 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 |||| ||||| ||||||||||||||| ||| | |||||||| || ||||| || Sbjct 37094 TCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGA 37153 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACA 48428 |||| | | | || | | ||| | |||||| | |||||| | ||||| Sbjct 37154 AGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACT---GTACA 37210 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 | || || ||||||||||| || || |||||||| || || ||| | ||||| || Sbjct 37211 TTTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCA 37270 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||||||||||| | || | || | |||||| || || || || ||||| ||||||| Sbjct 37271 CCTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAG 37330 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608 |||||||||| | ||||| | |||||| ||||| || | || || ||| Sbjct 37331 CAAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAAT 37390 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | | ||| ||| ||| ||||||||||| || |||||||| || || Sbjct 37391 CAGTCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGC 37439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931225929807360