Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq20348 96.9 3e-15 seq24486 91.5 1e-13 >seq20348 Length=30608 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | |||||||| ||||| || || ||||| || Sbjct 12693 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 12752 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| || || | || |||||||| ||| | || |||||| Sbjct 12753 GATACCATCGAAAATGTCAAAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGATCA 12811 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| | | |||||||| ||||| |||||||||||| ||| | ||||||| || Sbjct 12812 ACAGCGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGATTACAA 12871 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 || |||||||| ||||| ||||| |||| Sbjct 12872 TATCCAAAAAGAGTCTACATTGCACTTGGT 12901 >seq24486 Length=213816 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28548 GTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAA 28607 || ||||||||||| || || ||||| || || || || ||||| ||| || ||| Sbjct 88139 GTCAAAATGCAAATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAG 88198 Query 28608 CCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTA 28667 || || || || | | || ||||| || ||| ||||| |||||| | ||| | Sbjct 88199 CCCTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCA 88258 Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||||||| | || ||||| || ||||| || |||| ||| ||| || |||| Sbjct 88259 GATCAACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGAC 88318 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| || || || || || ||||| |||| Sbjct 88319 TACAACATCCAGAAGGAGTCGACCTTGCACTTGGT 88353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425268164498166