Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq20348 123 2e-22 seq20123 89.7 3e-12 seq18360 87.8 1e-11 >seq20348 Length=30608 Score = 123 bits (136), Expect = 2e-22 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || | || | |||| ||||| | ||| ||||| | ||||| Sbjct 12913 CGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTG 12854 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| | |||||| || ||||| || | ||| |||||||| |||||||||||| Sbjct 12853 CGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCT 12794 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || ||||| |||||||| ||||||| ||| || ||||| | || ||||| Sbjct 12793 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGA 12734 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| || |||||||| ||||| Sbjct 12733 GTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTG 12696 >seq20123 Length=68898 Score = 89.7 bits (98), Expect = 3e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 474671 TCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTA 474730 || || ||||| | |||||||||| | ||||| ||||||| || | || Sbjct 6735 TCCTCGATGGTGCTCACCAAAATGAAGGAGACCGCCGAAGCATATCTGGGTGGCGTTGTC 6794 Query 474731 ACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAA 474790 || ||||| || | || || || || ||||| ||||| || || || || || || ||| Sbjct 6795 ACCGATGCCGTTGTCACGGTGCCCGCCTATTTCAATGACTCGCAGCGCCAGGCGACCAAA 6854 Query 474791 GATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCC 474850 |||||||| ||||| || || ||||| | || || || || ||||| ||||| || Sbjct 6855 GATGCGGGCGCCATTGCCGGACTCAATGTGCTGCGCATCATCAACGAACCGACAGCGGCA 6914 Query 474851 GCACTTGCTTATGGTCTTGATAAG 474874 || |||| ||||| || || ||| Sbjct 6915 GCCATTGCCTATGGCCTGGACAAG 6938 >seq18360 Length=14482 Score = 87.8 bits (96), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| || ||| | || || || || ||||| | ||| ||||| || ||| Sbjct 7202 GCTATTGGCATCGATCTGGGCACAACATATTCCTGTGTGGGTGTCTGGCAGAACAACAAA 7143 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || ||||| || || || ||| | ||||| |||||||||||| | |||| Sbjct 7142 GTGGAGATCATAGCCAACGATCAGGGCAATCGCACAACTCCATCATATGTTGCCTTTAAC 7083 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCA 474486 |||||||| | ||| ||||| || || || || |||| Sbjct 7082 GAAACTGAGCGTCTGATTGGCGACGCCGCAAAGAATCA 7045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267048749070392