Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq25128 176 5e-39 seq18322 86.0 7e-12 >seq25128 Length=30855 Score = 176 bits (194), Expect = 5e-39 Identities = 643/991 (65%), Gaps = 23/991 (2%) Strand=Plus/Plus Query 75608 TACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGT 75667 ||| ||||||| |||||| |||||||| | |||||| | || | | ||| || Sbjct 18833 TACCTGGAACCTTGGCATTCCGATATCTTTGAGTTCTTGGACCTCAAAAAGAACACGGGC 18892 Query 75668 GACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCAT 75726 | |||||| | | | | | | |||||||| | || ||||||| || || || || || Sbjct 18893 AAGGAAGAG-CACAGAGCTCGTGATCTCTTCTACGCCTTGTGGATACCCGATCTGTTTAT 18951 Query 75727 GAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCT 75786 |||||| || || | || | ||||| || || ||||| ||||| || || | Sbjct 18952 GAAGCGTGTGGAAGCCAATGAGGATTGGTCGCTGTTGTGTCCTCACAAGTGTCCCGGCTT 19011 Query 75787 CTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAG-GAGGGTA 75845 |||| ||| || || ||||| || || ||||||||||| ||| |||||| Sbjct 19012 GGAAGACGTTTGGGGGGATGACTTTGAGAAGCTGTATACAAAGTATGA-GAGCGAGGGTC 19070 Query 75846 GAGCCAATGCGACTGTACCAGCCGCCGA-TGTTTGGAAGGCTATTCTCAAATCACAGACG 75904 | || ||| || || | | | | | ||||| | || ||| | |||| || Sbjct 19071 GCGCAAAT-CGTGTGATTAAAGCACAAACTCTTTGGTATGCCATTGTTGAATCTCAAGTT 19129 Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 |||||||| || || || ||||| | ||| || |||| |||| |||||| || || || Sbjct 19130 GAGACTGGCACTCCGTACATGCTCTTCAAAGACTCTTGCAACAGGAAGAGCAATCAGCAG 19189 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||| | || || ||||| || || || ||||| |||||| | || || | | Sbjct 19190 AATGTTGGCACCATCAAATGCAGCAACCTCTGCACCGAAATTGTTGAATATTCGGCACCC 19249 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 ||||||| || || |||||||||||||| || ||| | | || ||| | | |||| Sbjct 19250 GATGAGATTGCCGTCTGCAATTTGGCATCGATAGCCTTGAATATGTTTGTGACTTCAGAG 19309 Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144 | || || |||| | ||||| | ||| | || || | ||| |||| |||| | Sbjct 19310 A---AAACATTCGATTTCAAGAAACTAAAGGAAGTTACTAAAACTGTCACCAGAAATTTG 19366 Query 76145 AACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG---TCTAATATG 76201 ||| | ||||||| | |||| ||||| | | | | | |||| || ||| | Sbjct 19367 AACAAAATCATTGATATCAATTACTATCCGCT---GCCCGAGGCAAAGAAATCCAATTTA 19423 Query 76202 CGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGC 76261 |||| | || ||||| | || ||||| || | || || | || ||| || ||| Sbjct 19424 AGACATCGTCCCATTGGCATTGGCGTTCAGGGCTTTGCCGACGCCTTAATTCTGATGCGC 19483 Query 76262 TACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321 | | | ||| || ||||| | | ||| | ||||| |||||||| || Sbjct 19484 TTTCCCTATGAGAGTGACAAAGCCGTATTGCTCAATCAGCAGATCTTCGAAACCATCTAC 19543 Query 76322 CACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTT 76381 | | |||| ||||| |||||||| ||||| || | ||| ||||||| || | Sbjct 19544 TATGGTGCCCTTGAGGCCAGTTGTGAGCTGGCTCAAAAGGACGGTCCCTATGAAACCTAC 19603 Query 76382 GAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAG 76441 | |||| ||| | | | | || | || |||| |||||||||| | || ||| | Sbjct 19604 GCTGGTTGTCCGGTGAGCAAGGGAATTCTGCAGTACGATATGTGGG-ACAAGACACCCA- 19661 Query 76442 CTCAAC--TACGACTGGGATGTTCTCAA--GGAACGCATCAAGGAGAAGGGTCTTCGTAA 76497 | | | | || ||| || ||| || ||| ||||| ||| | || || | || Sbjct 19662 CAAACCTTTGGGATTGGACTGCTCTAAAATTGAA--AATCAAAGAGCATGGCGTTAGAAA 19719 Query 76498 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 76557 | || | |||| |||||||| || || || || || || ||| ||||||||||||| Sbjct 19720 CTCGCTGCTTGTGGCTCCAATGCCCACGGCATCTACTGCCCAGATCATGGGTAATAATGA 19779 Query 76558 ATGCTTTGAACCATACACAACAAACATCTAC 76588 | |||||| || || || ||||||| ||| Sbjct 19780 GTCCTTTGAGCCGTATACTTCAAACATTTAC 19810 >seq18322 Length=84725 Score = 86.0 bits (94), Expect = 7e-12 Identities = 172/251 (69%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 14356 TATGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAG-- 14413 ||||| ||||| | |||||| ||| |||| || |||| | | || || |||| Sbjct 71777 TATGGTAGATGGCTTAAAGCCTGGTCAGCGGAAGGTTATGTTTACGTGTTT---TAAGCG 71721 Query 14414 -AATCTCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGC 14472 || |||| |||| | ||||| || || ||| ||| | || || || | ||| | Sbjct 71720 TAACGACAAGCGTGAAGTTAAGGTTGCCCAGCTGTCGGGTTCCGTTGCCGAAATGTCATC 71661 Query 14473 GTACCACCATGGTGAAGTATCCTTAGCGGAC-ACGATTGTTAAGTTGGCAAACGACTACA 14531 ||| || ||||||||||| || | || | || ||||| || ||||| | |||| Sbjct 71660 GTATCATCATGGTGAAGTCTCGCT-GCAAATGACCATTGTGAATTTGGCGCAGAACTATG 71602 Query 14532 CGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGG 14591 ||| || ||||||||||| | | || || | |||||||| ||||| ||||||| | Sbjct 71601 TGGGATCGAACAACATTAATTTGTTAGAGCCACGCGGTCAATTCGGTACTCGTCTCACCG 71542 Query 14592 GTGGTAAGGAT 14602 |||| || ||| Sbjct 71541 GTGGAAAAGAT 71531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596373075059520