Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_021309.1 Length=74711 Score E Sequences producing significant alignments: (Bits) Value seq6607 315 3e-81 seq11958 212 3e-50 >seq6607 Length=38272 Score = 315 bits (348), Expect = 3e-81 Identities = 535/772 (69%), Gaps = 15/772 (2%) Strand=Plus/Plus Query 64749 GGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCC 64808 |||||| |||||||||||||| | | ||||| ||||||||| || || || || Sbjct 35445 GGACGTGGTTCCCACCGGCTCTCTGGGGCTGGATATCGCTCTGGGGATTGGCGGCCTGCC 35504 Query 64809 GAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCT 64868 | | ||||| ||| | ||||| |||||||| ||| || || || | || ||| || Sbjct 35505 GCGTGGCCGTGTGATTGAAATTTACGGCCCGGAAAGCTCCGGTAAAACCACGCTGGCGCT 35564 Query 64869 CCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCA 64928 || || | || | || |||||| || |||| | ||||| || || || ||||| Sbjct 35565 GCATGCCATTGCAGAGGCCCAGAAGCGGGGCGGCACCTGCGCCTTTATTGATGCCGAGCA 35624 Query 64929 CTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT 64988 | | |||||||||| ||||||||| |||||| ||||| | || || || || | Sbjct 35625 CGCGCTGGACCCCGGCTACGCCAAGAAGCTCGGCGTGGATATTGATAATCTGCTGATCAG 35684 Query 64989 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 65048 ||||| ||| | || |||||||| ||||| || | ||| || || ||||||| Sbjct 35685 CCAGCCCGACGCGGGTGAGCAGGCGCTGGAAATTGCGGACACACTGGTGCGCTCTGGCGC 35744 Query 65049 GCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGG 65108 | | | | || || || |||||||||||| |||||||| |||||||| ||||| Sbjct 35745 GATTGATGTGCTGGTGGTGGATAGTGTGGCGGCCCTTGTGCCGCGTGCCGAGCTTGAAGG 35804 Query 65109 CGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAA 65168 || || || ||||| || ||||||||||| || || || ||| ||||| ||||||| Sbjct 35805 GGATATGGGTGACAGCCATGTCGGCCTGCATGCCCGTCTGATGAGTCAGGCGCTGCGCAA 35864 Query 65169 GCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGA 65228 ||| || ||| || | | || ||||||| ||| | ||| | |||||| | || Sbjct 35865 GCTGACAGGCTCCGTTGCGCGCTCCAACACCATGATGATCTTCCTGAACCAGATCCGTCT 35924 Query 65229 GAAGATCGGC---AACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTT 65285 ||| || ||| | | ||| | |||| || ||||| |||||||| || || | Sbjct 35925 GAAAATTGGCGTGATGTTTGGCAA---CCCG---GAAACCACGACGGGCGGGAACGCACT 35978 Query 65286 GAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGA 65345 || |||||||||||| || || ||||| | || ||||||| || ||||| || Sbjct 35979 GAAGTTCTACGCCTCCGTGCGTCTGGATATTCGCCGCATCGGGTCCATCAAGGACAAGGA 36038 Query 65346 TGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCA 65405 ||||| || ||||||| || |||||||| || ||||| |||||| ||||||||||| Sbjct 36039 TGAGGTGGTGGGCAACCAGACGCGGGTGAAGGTGGTCAAAAACAAGATGGCCCCGCCGTT 36098 Query 65406 CCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTC---GAACT 65462 ||| | | ||||||| || |||| || || |||||| | ||||| || || Sbjct 36099 CCGTCAGGTCGAGTTCGATATCATGTATGGCGAAGGCATC---AGCAAGGTCGGGGAGCT 36155 Query 65463 CCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTC 65514 | || |||| |||| || ||||| ||||||| ||||| |||||| Sbjct 36156 GATTGATCTGGGCGTGAAAGCCGGTGTGGTGGAGAAGTCCGGCGCATGGTTC 36207 >seq11958 Length=2353 Score = 212 bits (234), Expect = 3e-50 Identities = 276/377 (73%), Gaps = 11/377 (3%) Strand=Plus/Minus Query 65105 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 65164 |||||||||| || ||||| || || || ||||| || ||||||||| ||||| ||| Sbjct 1157 AAGGCGACATGGGCGACAGCCATGTGGGTCTGCATGCCCGCCTCATGAGCCAGGCTCTGC 1098 Query 65165 GCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGC 65224 ||||||| || || || |||| || |||||||||| | ||| | |||||| | | Sbjct 1097 GCAAGCTGACGGGAACGGTCTCGCGCTCCAACACGCTCGTGATCTTCCTGAACCAGATCC 1038 Query 65225 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACGGGCGGAAAGG 65281 | ||| |||||| ||| | |||| ||| ||||| ||||||||||| || | Sbjct 1037 GTATGAAAATCGGC---GTGATGTTCGGC---AATCCGGAGACGACCACGGGCGGCAACG 984 Query 65282 CTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAG 65341 | ||| ||||||| |||| ||||| | ||| |||| ||||||| | || ||||| Sbjct 983 CCCTGAAGTTCTACTCCTCCATCCGCCTCGATATCCGCCGCATCGGCTCCATCAAGGACA 924 Query 65342 GCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGC 65401 || |||| ||||||||||| ||||| || || ||||||||||||||| ||||||| | Sbjct 923 AGGACGAGGTTGTCGGCAACCAGACCCGCGTCAAGGTCGTCAAGAACAAGATGGCCCCCC 864 Query 65402 CGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGA-GGTCGAA 65460 || ||| | | ||||||| | || |||| || || |||||| || || || |||| Sbjct 863 CGTTCCGTCAGGTCGAGTTCGACATCATGTATGGCGAAGGCATC-AGCAAGATGGGCGAA 805 Query 65461 CTCCTCGACCTGGCCGT 65477 || ||||| |||| ||| Sbjct 804 CTGCTCGATCTGGGCGT 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238873651670368