Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2467 127 6e-24 seq1005 127 6e-24 seq25128 109 2e-18 seq19105 107 6e-18 seq20207 104 7e-17 seq24592 93.3 1e-13 seq25255 87.8 5e-12 >seq2467 Length=9044 Score = 127 bits (140), Expect = 6e-24 Identities = 210/297 (71%), Gaps = 12/297 (4%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| || || ||||| |||||||||||||||||| | || |||||||| || Sbjct 5738 TTCCATAGCTTTAATCAAACGTCGCTGAATATAACCAGTTTCTGCAGTCTTTACAGCCGT 5797 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG--GTCGT-AG 302690 ||| || ||||| ||||||| ||||| ||||| | ||||| ||||| | ||| | Sbjct 5798 ATCGATGAGACCCTCACGACCGCCCATGGCATG--AAAATAG-AATTCCGATGGCGTCAA 5854 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCG---TCGAACTT 302747 || |||| | | ||| |||| |||||||| |||||||| || | || ||| || Sbjct 5855 TCCACCAAGATACGAGTTCTCCACGAAACCGCGCGCCTC---CGGACCGCTATCGTTTTT 5911 Query 302748 GGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTT 302807 | || || ||||| || | |||| | || || || || | || || || || || Sbjct 5912 TATGAAATGCGGCAGCGTGCGCTTCTTGAATCCATAAGGTATTCTCTGGCCCTCCACATT 5971 Query 302808 CTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 |||||| |||| |||| ||| | |||||| ||||| | | ||||||||||| Sbjct 5972 CTGCTGACCCACACACGCAATGACCTGCGAGATATTAATGTTGGATCCCTTGGAGCC 6028 >seq1005 Length=48977 Score = 127 bits (140), Expect = 6e-24 Identities = 190/264 (72%), Gaps = 8/264 (3%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | |||||||||||| ||||| ||| | || || ||||| ||| Sbjct 13614 TCCATAGCCTTGATCAGACGACGCTGAATGTAACCGGTTTCGGCAGTCTTCACAGCCGTA 13555 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 ||||| ||||| ||||||| ||||| || ||||| | | ||| || ||| || || Sbjct 13554 TCAATGAGACCTTCACGACCGCCCATGGCGTGGAAATAGAACTC-GGAGGGCGTCAGGCC 13496 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 | | | ||| |||| ||||| || | | |||||| || ||||||| |||| | Sbjct 13495 GGCGAGGTATGAGTTCTCCACGAATCCTCTGGACTCGGGACCGTAATCGTC---CTTGAT 13439 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || |||||||| || | ||| | ||||||| || ||||| || || ||||||||||| Sbjct 13438 GAAATGTGGCAGCGTGCGCTTCCTAAAGCCGTACGGAATACGTTTGCCCTCAACGTTCTG 13379 Query 302811 CTGTCCCAGGCACGAAATCATCTG 302834 || |||| || | ||| | ||| Sbjct 13378 TTGACCCACACAAGCAATAACCTG 13355 >seq25128 Length=30855 Score = 109 bits (120), Expect = 2e-18 Identities = 607/953 (64%), Gaps = 25/953 (3%) Strand=Plus/Minus Query 155405 GTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT 155464 |||||| || |||||||| ||||| || | || ||||| || ||||| | ||| Sbjct 19465 GTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGC 19406 Query 155465 CTTCTTGTTTGGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATAC 155521 || || || |||| | |||||| || || || |||||| || || | Sbjct 19405 CTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGTT-- 19348 Query 155522 CTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATAC- 155580 || || || || || |||| | || |||||||| || | | ||||||||| Sbjct 19347 -TTAGTAACTTCCTTTAGTTTCTTGAAATCGAATGTTTTCTCTGAAGTCACAAACATATT 19289 Query 155581 CAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTAC 155638 |||| | | | || |||| ||| || || ||| |||| | | || || | ||||| || Sbjct 19288 CAAGGCTA-TCGATGCCAAATTGCAGACGGCAATCTCATCGG-GT-GCCGAATATTCAAC 19232 Query 155639 AATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACT 155698 ||| || ||| ||||| | ||||||||||| | ||||| ||| || || || Sbjct 19231 AATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCT 19172 Query 155699 GTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 ||| |||| || ||| | || ||||| || || || ||||| | || | || | ||| Sbjct 19171 GTTGCAAGAGTCTTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACAAT 19112 Query 155759 CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTT 155818 ||| || | || ||||| || | || || |||||| || Sbjct 19111 GGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTGCGCGACCCTCGCTCTCATACTT 19052 Query 155819 CATATACAGCGTTCGGTAA-TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGG 155877 |||||||| ||| || || || || || || || || || ||||| | | Sbjct 19051 TGTATACAGC-TTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAG 18993 Query 155878 GGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCC 155937 | || |||||||||||| | ||| | ||||||| |||||| | ||| || Sbjct 18992 GACACAACAGCGACCAATCCTCATTGGCTTCCACACGCTTCATAAACAGATCGGGTATCC 18933 Query 155938 AAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCC-GTGATTCTTCCGTAG 155995 | | || ||||| || || | || || || ||| || | ||| ||| ||||| || Sbjct 18932 ACAAGGCGTAGAAGAGATCACGAGCTCTGTG-CTCTTCCTTGCCCGTG-TTCTTTTTGAG 18875 Query 155996 CTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATT 156055 || ||||| || ||||| | ||| || ||||| || || |||||| || Sbjct 18874 GTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGG 18815 Query 156056 CCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGG 156112 || |||||| ||| ||||| ||||| ||||| ||||| || || | ||||| || Sbjct 18814 CCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACTCTGAGCATGGG 18755 Query 156113 AATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATT 156172 | | |||||| ||||||||||| || || | || | || | |||| | Sbjct 18754 CACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTGGCACGAATACA 18695 Query 156173 ATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGT 156232 ||| | || |||||||| ||||| | |||| || || || || | || || | Sbjct 18694 ATGCACATTGAGTCCAATGCCACCAGCGGATTTGGAGATCATTGCACACTGCTCGACGGA 18635 Query 156233 ATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTG 156292 |||||||| ||||| || ||||| |||||| ||| || | ||||| | || Sbjct 18634 CTTGAAAATGCCTTCGATGGAATCGGAAACCATTGTTAGAAGGAAACACGATGACATCTG 18575 Query 156293 AGGTCG--TGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 || || ||||| |||| ||||| || || | |||||| ||||||| Sbjct 18574 GGGACGATTGGTG--GCAGCAGCAAATAGCGTTGGCGATGCATGCGTAAAATA 18524 >seq19105 Length=237168 Score = 107 bits (118), Expect = 6e-18 Identities = 267/401 (67%), Gaps = 6/401 (1%) Strand=Plus/Minus Query 133229 TTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATG 133288 || || || |||||||| |||||| |||||| |||||| | | ||| |||| Sbjct 37343 TTGGCCTTCTTTGCTGCTTCTGATGGAATTGTTAACGAAAATCTGGTCGAACGTTTTAGC 37284 Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 |||||| || || |||| || ||| ||||||||| | |||||||| ||||| ||| Sbjct 37283 CAAGAAGTGCAGGTGACCGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAAT 37224 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 | ||||| | || | || ||||| || || |||| ||| | ||| Sbjct 37223 GTGCATTCCGAAATGTACAGTGTGCTCATTGACACCTATATCAGGGATCCTCATCAGCGA 37164 Query 133409 CACAAACTATTCAACGCCATT--AGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGG 133466 || | || ||||| |||||| | ||| | || | |||| ||| | ||||||| Sbjct 37163 GACTATCTCTTCAATGCCATTGAAACGA--TGCCGGCTGTTAAGCGGAAGGCAGACTGGG 37106 Query 133467 CTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTG 133526 || || |||||| ||| ||| | |||| | ||| | |||||||||||| Sbjct 37105 CTCTTTCTTGGATCTCTTCGAAGGCTGCCAACTTTGGTGAACGTATTATTGCTTTTGCTG 37046 Query 133527 TAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGT 133585 || || ||||| || |||||||| | | | ||| || || || ||||| || |||||| Sbjct 37045 CTGTTGAAGGCATCTTCTTCAGTGG-GAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGT 36987 Query 133586 GGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTC 133626 || || | |||||||| || || |||||| | || || Sbjct 36986 GGACTTATGCCTGGACTTACATTCTCCAACGAATTGATCTC 36946 >seq20207 Length=18756 Score = 104 bits (114), Expect = 7e-17 Identities = 123/162 (76%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| || || ||||| |||||||||||||||||| | || |||||||| || Sbjct 11949 TTCCATAGCTTTAATCAAACGTCGCTGAATATAACCAGTTTCTGCAGTCTTTACAGCCGT 11890 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG--GTCGT-AG 302690 ||| || ||||| ||||||| ||||| ||||| | ||||| ||||| | ||| | Sbjct 11889 ATCGATGAGACCCTCACGACCGCCCATGGCATG--AAAATAG-AATTCCGATGGCGTCAA 11833 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 || |||| | | ||| |||| |||||||| |||||||| || Sbjct 11832 TCCACCAAGATACGAGTTCTCCACGAAACCGCGCGCCTCCGG 11791 >seq24592 Length=4573 Score = 93.3 bits (102), Expect = 1e-13 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||||||| || || |||||||| ||||| ||||||||||| || || ||||| || Sbjct 2618 TGCACCGTGAGAGATTTGGCAATCACGTTCCATCTCACCGAAACGCAGGCCGCCATCACG 2559 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 ||| || ||||| ||||||||| ||| | || |||||| || || ||| Sbjct 2558 AGCTCTGCCCTCCATAGGCTGACGCACAAGAATCTGCACAGGACCACGGGCACGCGAATG 2499 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 ||| || | ||||| |||||||||||||| ||| | | ||| || | ||| Sbjct 2498 GATCTTGTCGTCCACCATGTGCTTGAGACGCTGATAGTAAGTGGGGCCAAGGAA 2445 >seq25255 Length=46576 Score = 87.8 bits (96), Expect = 5e-12 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| | || ||||||||| |||||||| || ||||||||||| || |||||| || Sbjct 46407 TGGCCAATTGTCATACGAGATGGAATAGCGTGAGGATTGATGATAATATCGGGTGCCAAA 46348 Query 251899 CCATCAGCA-GTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTT 251956 || || ||| ||||| | ||| |||| | || ||| || | ||| |||||||| | Sbjct 46347 CCCTC-GCAGGTGAATGCCATGTCCTCCT-GTCGATACTGAATACCACATGTTCCCTTCT 46290 Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAA 252016 |||||||||| || ||||| || ||||| || ||| ||| || | |||| Sbjct 46289 GTCCGTGACGCGAGGCAAACTTGTCGCCAATCTGTGGGATGCGCACAGAGCGCACACGAA 46230 Query 252017 CCTTACAGAAGTTGTAACCATCACCGTTG 252045 ||| ||||| ||||| || || | |||| Sbjct 46229 TCTTGCAGAACTTGTAGCCTTCGCTGTTG 46201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471320625149298