Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq17665 145 9e-29 seq13053 145 9e-29 seq17959 104 3e-16 seq1005 100 3e-15 seq20201 98.7 1e-14 seq8364 98.7 1e-14 seq25128 93.3 5e-13 >seq17665 Length=18468 Score = 145 bits (160), Expect = 9e-29 Identities = 149/193 (77%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCG--ACGTCGAGCAGCC 1592163 ||||||| ||||| |||||| | ||||||| | || ||| | | || || ||| Sbjct 14120 AGAAGCGAACCGATGACATCACATCGTGGGAT--GCAGATTTCCTTAAAGTGGATCAGGG 14063 Query 1592164 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCT 1592223 ||| || ||||| |||||| | || |||||||| | ||||||||| |||| || || Sbjct 14062 CACTCTATTTGAATTGATCTTGGCTGCCAACTATTTGGACATCAAGGGATTGCTGGAGCT 14003 Query 1592224 TGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGAC 1592283 ||||||| |||||||||||||||||||||||||| | || ||||| || |||||||| Sbjct 14002 AACGTGCAAGACTGTGGCCAACATGATCAAGGGCAAGACTCCGGAGGATATACGCAAGAC 13943 Query 1592284 CTTTAACATCAAG 1592296 |||||||||||| Sbjct 13942 ATTTAACATCAAG 13930 >seq13053 Length=20672 Score = 145 bits (160), Expect = 9e-29 Identities = 149/193 (77%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCG--ACGTCGAGCAGCC 1592163 ||||||| ||||| |||||| | ||||||| | || ||| | | || || ||| Sbjct 12541 AGAAGCGAACCGATGACATCACATCGTGGGAT--GCAGATTTCCTTAAAGTGGATCAGGG 12484 Query 1592164 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCT 1592223 ||| || ||||| |||||| | || |||||||| | ||||||||| |||| || || Sbjct 12483 CACTCTATTTGAATTGATCTTGGCTGCCAACTATTTGGACATCAAGGGATTGCTGGAGCT 12424 Query 1592224 TGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGAC 1592283 ||||||| |||||||||||||||||||||||||| | || ||||| || |||||||| Sbjct 12423 AACGTGCAAGACTGTGGCCAACATGATCAAGGGCAAGACTCCGGAGGATATACGCAAGAC 12364 Query 1592284 CTTTAACATCAAG 1592296 |||||||||||| Sbjct 12363 ATTTAACATCAAG 12351 >seq17959 Length=3161164 Score = 104 bits (114), Expect = 3e-16 Identities = 178/258 (69%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 1572380 CCGGTCGAGCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCG 1572439 || || ||||||||||| || |||||| | ||||| ||||| ||||||| ||| Sbjct 1621210 CCCGTTGAGCCAAAGCCACCCTCGCCGCGTACTGTGTCCTCCAGTTTGTCGACCTGCTCC 1621269 Query 1572440 GGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACA 1572499 ||||||| | | || |||| | || ||||| ||||| | | | || || Sbjct 1621270 AGCTCGGGATAGAAGATGCGTTCGCAAATGAATTGGGCAATGCGATCACCACGCTTCACC 1621329 Query 1572500 ACGTGGTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCA 1572559 || ||||| || | ||| ||||| ||||| || |||| | |||||||||||| || Sbjct 1621330 TCGAAATCGGCATCCGAGTGATTGAACAGCACAACACCCAGATTGCCGCGATAGTCCTCA 1621389 Query 1572560 TCGATGACGCCTGCGCCGACGTCGAT---GCCCCTGACGGCCAGGGACGAGCGCGGCGCC 1572616 || | ||||| || || |||||||| | | | || |||| | ||||| |||||| Sbjct 1621390 TCCACAACGCCGGCTCCCACGTCGATGAAGTTCTTCACAGCCAAGCCAGAGCGTGGCGCC 1621449 Query 1572617 ACGCGCCCATAGTAGCCC 1572634 || || |||||| | ||| Sbjct 1621450 ACACGGCCATAGGAACCC 1621467 >seq1005 Length=48977 Score = 100 bits (110), Expect = 3e-15 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 507077 TCGGGCAAGCCCACCAAGGGCCTCGTGGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGC 507136 |||||||| ||| ||||| || || ||| ||||||||||||||||| | || || Sbjct 11849 TCGGGCAAACCCCTCAAGGCGATCAAGGCGCGTCTCAAGGGCAAGGAGGGTCGCATTCGT 11908 Query 507137 GGCAATTGCATGGGCAAGCGCGTCAACTTTACCGCGCGCGCCGTCATCAGCCCCGACCCC 507196 || |||| |||||||| || ||| |||| |||| || | ||||||| ||||| ||| Sbjct 11909 GGTAATTTGATGGGCAAACGTGTCGACTTCTCCGCACGTACTGTCATCACACCCGATCCC 11968 Query 507197 GAGAT-CGACATTGACGAGGTGGGCGTGCCCTATGAGATCGTCAAGACGCTCACCTTTCC 507255 | | ||| || || ||||||||||||| | || | | | |||||||| || Sbjct 11969 AATTTGCGA-ATCGATCAGGTGGGCGTGCCGCGTTCCATAGCACAAAATCTCACCTTCCC 12027 Query 507256 CGAGCGCGTGACGCCCCTTACCAT 507279 ||||| || |||||| | | ||| Sbjct 12028 CGAGCTGGTTACGCCCTTCAACAT 12051 >seq20201 Length=249908 Score = 98.7 bits (108), Expect = 1e-14 Identities = 190/278 (68%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 1852371 ACTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGT-GCTGG 1852429 ||||||| | | |||| ||||||| || | |||||||||| || ||| ||| Sbjct 72075 ACTGGTAGTTGCTGCCCTTGACAAACTTCAGCTTGTCCAGCGGCACTCCAATGGAGCTCA 72016 Query 1852430 AGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGC 1852489 | |||||| ||||| | |||||| | | || || | ||| ||| || Sbjct 72015 A-CATGGCTTTGATCACCTGCTCGTAATACTGTGTGCGCAACTCCAGCAGCGACCATGGT 71957 Query 1852490 GTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCG 1852549 | ||| ||| || || | ||| |||| |||||||| || || | ||| |||||| Sbjct 71956 GCCTTCATGTTATCCAGATAGGCATGCAGATCGGCAAACAGAATGGTCACCTCACAGCCA 71897 Query 1852550 GCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCC 1852609 |||| ||| |||||||| | ||| | ||||||||||||||| | | || || |||||| Sbjct 71896 GCCTTGAGGAAGTCGGCAATCTTGGACATGGGCACAAAGTAGGCGACATGTGGTTTGCCC 71837 Query 1852610 GTCGGCGCCGTGCCCCAATATATGATCAGGGGGCGCTC 1852647 || | || |||||||| || || |||| |||||| Sbjct 71836 GTTGTTGCTGTGCCCCAGTAGATTTTCAGATCGCGCTC 71799 >seq8364 Length=11207 Score = 98.7 bits (108), Expect = 1e-14 Identities = 190/278 (68%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 1852371 ACTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGT-GCTGG 1852429 ||||||| | | |||| ||||||| || | |||||||||| || ||| ||| Sbjct 6956 ACTGGTAGTTGCTGCCCTTGACAAACTTCAGCTTGTCCAGCGGCACTCCAATGGAGCTCA 6897 Query 1852430 AGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGC 1852489 | |||||| ||||| | |||||| | | || || | ||| ||| || Sbjct 6896 A-CATGGCTTTGATCACCTGCTCGTAATACTGTGTGCGCAACTCCAGCAGCGACCATGGT 6838 Query 1852490 GTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCG 1852549 | ||| ||| || || | ||| |||| |||||||| || || | ||| |||||| Sbjct 6837 GCCTTCATGTTATCCAGATAGGCATGCAGATCGGCAAACAGAATGGTCACCTCACAGCCA 6778 Query 1852550 GCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCC 1852609 |||| ||| |||||||| | ||| | ||||||||||||||| | | || || |||||| Sbjct 6777 GCCTTGAGGAAGTCGGCAATCTTGGACATGGGCACAAAGTAGGCGACATGTGGTTTGCCC 6718 Query 1852610 GTCGGCGCCGTGCCCCAATATATGATCAGGGGGCGCTC 1852647 || | || |||||||| || || |||| |||||| Sbjct 6717 GTTGTTGCTGTGCCCCAGTAGATTTTCAGATCGCGCTC 6680 >seq25128 Length=30855 Score = 93.3 bits (102), Expect = 5e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 1628407 GGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTC 1628466 ||||| || |||||||| || || || || | || |||||| || || || Sbjct 18993 GGACACAACAGCGACCAATCCTCATTGGCTTCCACACGCTTCATAAACAGATCGGGTATC 18934 Query 1628467 CACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGG 1628526 |||| ||||| ||||| || || || | || ||| |||||||| ||||||||||||| Sbjct 18933 CACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGG 18874 Query 1628527 TCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 1628586 || | | || | || |||| ||||| || |||||||| |||||| ||||| Sbjct 18873 TCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGC 18814 Query 1628587 CGCTTGCCGCCGCC 1628600 ||||||||||| || Sbjct 18813 CGCTTGCCGCCACC 18800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104976467344218