Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq25128 279 5e-70 seq20348 145 7e-30 seq14047 132 4e-26 seq25099 116 3e-21 seq24486 113 4e-20 >seq25128 Length=30855 Score = 279 bits (308), Expect = 5e-70 Identities = 961/1487 (65%), Gaps = 45/1487 (3%) Strand=Plus/Minus Query 138172 ATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCCGTTTTTAACCCATTTTCC 138231 || |||| || ||||| || || | ||||||||||||||| || || | || | | Sbjct 20178 ATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCTGTCTTGAGGCCTGCCTTC 20119 Query 138232 CAGGCGTACATGTGTATCGAAGTGAGTAAC--GCGTAAGTCGGTTTCGCCAGAAAT--AT 138287 || | | | | || || || || |||| || ||| || |||| || | | || Sbjct 20118 CACGAGAAGAAATGAATGGATGT---TAACTTGCCGTAGTTGGGTTCGGCA-ACGTGAAT 20063 Query 138288 GTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCCATGTTAATTAAATT 138347 ||| || ||||||||||| || || ||||| || |||||| ||||| || || Sbjct 20062 GTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCCATCTTGATGG---- 20007 Query 138348 TTTACTTTTC----ATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTG 138403 || |||| | || ||||| ||||| ||||| ||||| || | | | || || | Sbjct 20006 TTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACTTCCTGAGGAATGG 19947 Query 138404 TTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGT 138463 | | || ||||| ||| || |||||||| |||| |||||||||| | Sbjct 19946 ATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCATGTCATCATCCC 19887 Query 138464 ACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGG 138523 | | || || | | | || || | || || |||| || | || || |||| Sbjct 19886 ATAAATCCAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATTGAACTCTCCGG 19827 Query 138524 CCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCA 138583 ||| || || | ||||||||| || | |||||||| || || || || |||| Sbjct 19826 ACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTCATTATTACCCA 19767 Query 138584 GAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGT 138643 ||||| || || | || || ||||| ||||| | || || || | | || | Sbjct 19766 TGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCCACAAGCAGCGAGTTTCTAACGCCAT 19707 Query 138644 GAAGCTTGATTCGTTCC--TTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTT 138701 | |||||| ||| || || | | ||| ||||| | | | ||| | |||| Sbjct 19706 GCTCTTTGATT--TTCAATTTTAGAGCAGTCCAATCCCAAAGGTTTGTGGGTGTCTTGTC 19649 Query 138702 CCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATAC 138761 ||||||||||||||| | |||||| || | |||| || |||| | || || Sbjct 19648 CCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGG 19589 Query 138762 ACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGC 138821 ||| || ||| |||| ||| || ||||| || ||||||||||| || |||||| Sbjct 19588 ACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAA 19529 Query 138822 AATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAA 138881 |||||||||||||||||| ||| | | | ||||| || || | ||| | || | || Sbjct 19528 GATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAGCGCATCAGAATTAA 19469 Query 138882 CGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTT 138941 |||||||| | || || ||||| | || | || ||||| | | ||| || || Sbjct 19468 GGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTT 19409 Query 138942 TGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCAC 139001 ||| | | ||||| || || | ||| ||||||||||| ||||||| ||| Sbjct 19408 TGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGT 19349 Query 139002 CTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTC 139061 ||||| | ||||| | | |||||| |||| || || || ||| Sbjct 19348 TTTAGTAACTTCCTTTAGTTTCTTGAAATCGAATGT-------TT----TCTCTGAAGTC 19300 Query 139062 GACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCT 139121 ||||| | || | ||||| || | ||||| || || | || ||||| | Sbjct 19299 -ACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTGCCGA 19241 Query 139122 GTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATT 139181 ||||| |||||||||| || | || || || ||||| || || | ||| || ||||| Sbjct 19240 ATATTCAACAATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGATT 19181 Query 139182 GCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGT 139241 ||| || | ||| |||| |||||| | ||||| ||||| |||||||| || ||||| | Sbjct 19180 GCTCTTCCTGTTGCAAGAGTCTTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGA 19121 Query 139242 CTCTATAAT-GAATTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCG---- 139296 || | ||| | || || ||| | |||| || | |||| | || Sbjct 19120 TTCAACAATGGCATACCAAAGAGTTTGT-GCTTTAAT----CACACGATTTGCGCGACCC 19066 Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356 |||| ||| |||||| || || | || || || || | |||| | || Sbjct 19065 TCGCTCTCATACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCG 19006 Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 ||||||||| |||||||| |||||||| | | || || | || ||| |||| ||| Sbjct 19005 GGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCTTCCACACGCTTCATAAAC 18946 Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATG 139476 ||||| || |||||||| ||| | | | ||| || || | | |||||| ||| || Sbjct 18945 AGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTG 18886 Query 139477 TTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCC 139536 || ||| | || | ||| ||||| | || | ||||| |||||||| || ||||| Sbjct 18885 TTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCA 18826 Query 139537 ATTGCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACG 139593 | |||||| ||| || ||||||||||||||| | || | ||||||| || || Sbjct 18825 AAAGCGCCTGGCCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACT 18766 Query 139594 CGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGAT 139640 | | ||| ||| ||| ||| | | || || || |||| || ||| Sbjct 18765 CTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGAT 18719 >seq20348 Length=30608 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| ||||| ||||||| || || ||||| || || || || || || ||| | Sbjct 12690 ACGATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCG 12749 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | |||| || ||| ||||| || |||||||||||||| ||||| ||| Sbjct 12750 TCGGATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 12809 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||| ||||||||||||||||| || || |||| ||| | | | | || ||||| Sbjct 12810 CAACAGCGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGATTAC 12869 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || ||| | ||||||||| | || | ||||| || Sbjct 12870 AATATCCAAAAAGAGTCTACATTGCACTTGGTGCTCCGCCTTCGCGGTGG 12919 >seq14047 Length=15719 Score = 132 bits (146), Expect = 4e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||||||||||||||| || || ||||| || ||| ||||||| ||||| || Sbjct 15555 AAGATCCAAGACAAAGAAGGAATCCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 15614 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| | | | |||||||| || |||||||||||||||||||| ||| Sbjct 15615 CAGCTGGAGGATGGTCGCACTCTTTCAGATTACAATATTCAAAAGGAATCGACACTTCAC 15674 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| | ||| | || || || Sbjct 15675 TTGGTCCTCCGACTACGTGGTGG 15697 >seq25099 Length=83779 Score = 116 bits (128), Expect = 3e-21 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || ||||| || || || || || ||||||||| | | || || | || | || || Sbjct 21398 CTGACCGGAAAGACCATCACCCTGGAAGTAGAACCTTCTGATACCATTGAGAATGTGAAG 21339 Query 24785 CAA--AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCG 24842 ||||||||||| || |||||||| ||||| ||||| || ||| | ||||| |||| Sbjct 21338 NGGCCAAGATCCAAGATAAGGAAGGAATCCCTCCAGATCAGCAGCGTCTCATCTTCGCCG 21279 Query 24843 GGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACAC 24902 | || |||||||||||| | | | | || |||||||||||||| || || ||||| | Sbjct 21278 GCAAGCAGCTGGAGGATGGTCGCACCCTTTCTGATTATAACATTCAGAAAGAGTCGACCC 21219 Query 24903 TACACTTGGTGTTGCGATTGCGCGGAGG 24930 | |||||||| | ||| | || || || Sbjct 21218 TTCACTTGGTCCTCCGACTCCGAGGCGG 21191 >seq24486 Length=213816 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| | || || || || || || | || || || || | Sbjct 88145 ATGCAAATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCTCT 88204 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || ||||| || || |||||| Sbjct 88205 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAA 88264 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || |||||||||||| | | |||| || || ||| Sbjct 88265 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 88324 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| | ||||||||| |||| |||| || || Sbjct 88325 ATCCAGAAGGAGTCGACCTTGCACTTGGTGCTGCGTCTGCGTGGTGG 88371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449749392483120