Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_022981.1 Length=76323 Score E Sequences producing significant alignments: (Bits) Value seq6607 315 3e-81 seq11958 221 6e-53 >seq6607 Length=38272 Score = 315 bits (348), Expect = 3e-81 Identities = 535/772 (69%), Gaps = 15/772 (2%) Strand=Plus/Plus Query 66337 GGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCC 66396 |||||| |||||||||||||| | | ||||| ||||||||| || || || || Sbjct 35445 GGACGTGGTTCCCACCGGCTCTCTGGGGCTGGATATCGCTCTGGGGATTGGCGGCCTGCC 35504 Query 66397 GAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCT 66456 | | ||||| ||| | ||||| |||||||| ||| || || || | || ||| || Sbjct 35505 GCGTGGCCGTGTGATTGAAATTTACGGCCCGGAAAGCTCCGGTAAAACCACGCTGGCGCT 35564 Query 66457 CCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCA 66516 || || | || | || |||||| || |||| | ||||| || || || ||||| Sbjct 35565 GCATGCCATTGCAGAGGCCCAGAAGCGGGGCGGCACCTGCGCCTTTATTGATGCCGAGCA 35624 Query 66517 CTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT 66576 | | |||||||| | ||||||||| |||||| ||||| | || || || || | Sbjct 35625 CGCGCTGGACCCCGGCTACGCCAAGAAGCTCGGCGTGGATATTGATAATCTGCTGATCAG 35684 Query 66577 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 66636 ||||| ||| | || |||||||| ||||| || | ||| || || ||||||| Sbjct 35685 CCAGCCCGACGCGGGTGAGCAGGCGCTGGAAATTGCGGACACACTGGTGCGCTCTGGCGC 35744 Query 66637 GCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGG 66696 | | | | || || || |||||||||||| |||||||| |||||||| ||||| Sbjct 35745 GATTGATGTGCTGGTGGTGGATAGTGTGGCGGCCCTTGTGCCGCGTGCCGAGCTTGAAGG 35804 Query 66697 CGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAA 66756 || || || ||||| || ||||||||||| || || || ||| ||||| ||||||| Sbjct 35805 GGATATGGGTGACAGCCATGTCGGCCTGCATGCCCGTCTGATGAGTCAGGCGCTGCGCAA 35864 Query 66757 GCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGA 66816 ||| || ||| || | | || ||||||| ||| | ||| | |||||| | || Sbjct 35865 GCTGACAGGCTCCGTTGCGCGCTCCAACACCATGATGATCTTCCTGAACCAGATCCGTCT 35924 Query 66817 GAAGATCGGCAACGTG---GGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTT 66873 ||| || ||| || ||| || ||| || ||||| |||||||| || || | Sbjct 35925 GAAAATTGGCGTGATGTTTGGCAAC---CCG---GAAACCACGACGGGCGGGAACGCACT 35978 Query 66874 GAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGA 66933 || |||||||||||| || || ||||| | || ||||||| || ||||| || Sbjct 35979 GAAGTTCTACGCCTCCGTGCGTCTGGATATTCGCCGCATCGGGTCCATCAAGGACAAGGA 36038 Query 66934 TGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCA 66993 ||||| || ||||||| || ||||||||||| ||||| |||||| ||||||||||| Sbjct 36039 TGAGGTGGTGGGCAACCAGACGCGGGTGAAGGTGGTCAAAAACAAGATGGCCCCGCCGTT 36098 Query 66994 CCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTC---GAACT 67050 ||| | | ||||||| || |||| || || |||||| | ||||| || || Sbjct 36099 CCGTCAGGTCGAGTTCGATATCATGTATGGCGAAGGCATC---AGCAAGGTCGGGGAGCT 36155 Query 67051 CCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTC 67102 | || |||| |||| || ||||| ||||||| ||||| |||||| Sbjct 36156 GATTGATCTGGGCGTGAAAGCCGGTGTGGTGGAGAAGTCCGGCGCATGGTTC 36207 >seq11958 Length=2353 Score = 221 bits (244), Expect = 6e-53 Identities = 278/377 (74%), Gaps = 11/377 (3%) Strand=Plus/Minus Query 66693 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 66752 |||||||||| || ||||| || || || ||||| || ||||||||| ||||| ||| Sbjct 1157 AAGGCGACATGGGCGACAGCCATGTGGGTCTGCATGCCCGCCTCATGAGCCAGGCTCTGC 1098 Query 66753 GCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGC 66812 ||||||| || || || |||| || |||||||||| | ||| | |||||| | | Sbjct 1097 GCAAGCTGACGGGAACGGTCTCGCGCTCCAACACGCTCGTGATCTTCCTGAACCAGATCC 1038 Query 66813 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACGGGCGGCAAGG 66869 | ||| |||||| ||| | |||| ||| ||||| |||||||||||||| | Sbjct 1037 GTATGAAAATCGGC---GTGATGTTCGGC---AATCCGGAGACGACCACGGGCGGCAACG 984 Query 66870 CTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAG 66929 | ||| ||||||| |||| ||||| | ||| |||| ||||||| | || ||||| Sbjct 983 CCCTGAAGTTCTACTCCTCCATCCGCCTCGATATCCGCCGCATCGGCTCCATCAAGGACA 924 Query 66930 GCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGC 66989 || |||| ||||||||||| ||||| || |||||||||||||||||| ||||||| | Sbjct 923 AGGACGAGGTTGTCGGCAACCAGACCCGCGTCAAGGTCGTCAAGAACAAGATGGCCCCCC 864 Query 66990 CGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGA-GGTCGAA 67048 || ||| | | ||||||| | || |||| || || |||||| || || || |||| Sbjct 863 CGTTCCGTCAGGTCGAGTTCGACATCATGTATGGCGAAGGCATC-AGCAAGATGGGCGAA 805 Query 67049 CTCCTCGACCTGGCCGT 67065 || ||||| |||| ||| Sbjct 804 CTGCTCGATCTGGGCGT 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244030394847096