Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq18360 111 1e-18 seq8415 96.9 3e-14 >seq18360 Length=14482 Score = 111 bits (122), Expect = 1e-18 Identities = 276/415 (67%), Gaps = 13/415 (3%) Strand=Plus/Plus Query 282068 GAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCT 282127 ||||| |||| ||| || || |||||||||||||| | |||| || | || | Sbjct 6116 GAAGAGAGTGTACGCTTGGCCCGTTCACATGCTGTGCGGAGTCGACGCAGAGCACGAAC- 6174 Query 282128 GATTGATTCAAATCTG--TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAA 282185 ||| || ||| | | || | || | |||||| || || ||| | | |||| Sbjct 6175 -ATTACTTGTAATGTTGCTCTTGTGCTTGCGCTTGAACTCCTCTACAAAGTGATTGACAA 6233 Query 282186 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 282245 ||||||| ||||| || || || |||| | |||| || | || || | || | || Sbjct 6234 GACGATTGTCAAAGTCCTCGCCACCCAGATGTGTATCGCCGGCTGTGGCCTTCACCTCGA 6293 Query 282246 AAAG---TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAA 282302 | || || || |||| | | | | |||||| ||| || ||||||| ||||| Sbjct 6294 ACAGCGAGCCCTCGTCAATGGTGAGTATGGACACATCAAAGGTGCCGCCACCCAAATCAA 6353 Query 282303 AAATAAGTACATTCATTTCTTTGTCTT---GGTTTTTATCAAGACCATACGCAAAAGCAG 282359 | || | ||||| || | ||| | || || || || ||||| || ||||||| Sbjct 6354 AGATCAACACATTGCGCTC---GCCTTTCAGATTCTTGTCCAGGCCATAGGCCAAAGCAG 6410 Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419 | || || || ||||| ||||| | || ||||| || |||||||| ||| ||||||| Sbjct 6411 CTGCTGTCGGCTCATTGATAATGCGCAGCACATTTAGGCCAGCAATGGATCCGGCATCTT 6470 Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 | || || || | || || || || ||||| || || || || || |||||||| Sbjct 6471 TGGTTGCCTGACGCTGCGAGTCATTGAAATAAGCTGGCACTGTGATGACGGCATC 6525 Score = 109 bits (120), Expect = 4e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 |||| || || || || ||||||||| | || || || |||| | ||||||||||||| Sbjct 7045 TGATTCTTTGCGGCGTCGCCAATCAGACGCTCAGTTTCGTTAAAGGCAACATATGATGGA 7104 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 282841 ||||||||||| || ||||| || || || || || ||||| || ||||| ||||| Sbjct 7105 GTTGTGCGATTGCCCTGATCGTTGGCTATGATCTCCACTTTGTTGTTCTGCCAGACACCC 7164 Query 282842 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 ||||| | | ||||| || | ||| || |||||||| Sbjct 7165 ACACAGGAATATGTTGTGCCCAGATCGATGCCAATAGC 7202 >seq8415 Length=34126 Score = 96.9 bits (106), Expect = 3e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| |||||||| || ||||| || || || | || || | |||||| ||| Sbjct 8865 CCATAGGCAAGGGCAGCAGCCGTCGGTTCGTTGATGATACGCAGGACTTCAAGACCGGCA 8806 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | ||||||||||| || || || | || | ||| ||||| || || ||||| || Sbjct 8805 ATACGGCCTGCATCTTTGGTCGCCTGACGCTGGGCATCATTAAAGTAAGCCGGAACCGTG 8746 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 || ||||| | || |||| || |||| || || || |||| ||||||||| Sbjct 8745 ATCACGGCCTGCGTCACTTTTTCACCAAGGTACGCCTCGGCGGTTTCTTTCATTTT 8690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739336529972004