Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq25128 161 1e-34 seq20348 111 2e-19 >seq25128 Length=30855 Score = 161 bits (178), Expect = 1e-34 Identities = 546/836 (65%), Gaps = 36/836 (4%) Strand=Plus/Minus Query 150995 GCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTC 151054 ||||| || |||||||||| || ||| ||| || | ||||| || || | ||| Sbjct 19575 GCCAGCTCACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTG 19516 Query 151055 AATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAA 151114 | | ||||| || ||| | || || | ||||| || || || || ||||| || Sbjct 19515 AGCAATACGGCTTTGTCACTCTCATAGGGAAAGCGCATCAGAATTAAGGCGTCGGCAAAG 19456 Query 151115 CCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATA 151174 || |||| ||| ||||| ||||||||||| | | ||| ||||| ||||| | Sbjct 19455 CCCTGAACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGCAGC 19396 Query 151175 GGGTAGAAATTGCGATCAATAATTTTATTCAAACTATTCACTACATGTTTGACCACAGTG 151234 || ||| ||||| |||||| ||||| |||||| | | ||| |||| | | | | Sbjct 19395 GGATAGTAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACA-GTTTTAGTA-ACT- 19339 Query 151235 TGCAATAGTTGA---AAATCAAAAGTATCATT---ATTGATATATTTATTGACGGCAATC 151288 | | ||||| ||||| || || | | | | | | | |||| | ||| ||| Sbjct 19338 TCCTTTAGTTTCTTGAAATCGAATGTTTTCTCTGAAGTCACAAACATATTCAAGGCTATC 19279 Query 151289 GACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACAC 151348 || || | ||| || |||||| | || ||||| || |||||| || ||||| | || Sbjct 19278 GATGCCAAATTGCAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCGGTGCAG 19219 Query 151349 AAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCC 151408 | ||||||||||| || || ||| |||||||| || | |||||||| ||| Sbjct 19218 AGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCT 19159 Query 151409 TTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATAATG--TTTC----GC 151462 ||| | | ||||||||| ||||| || || ||||| ||| | |||| | | | Sbjct 19158 TTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAAGA 19099 Query 151463 ATTAATG---TAACCGCGGGCATTTGCTCGCGAAACTGGCCTTTATCCTCATAATGTTTG 151519 || || ||| | | | ||||| ||||| || || |||||| | | | Sbjct 19098 GTTTGTGCTTTAATCACACG-ATTTG--CGCGACCCTCGC------TCTCATACTTTGTA 19048 Query 151520 TACCAGTATTCAAAGTCAT--CACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGAC 151577 ||| | |||||||||| | ||| ||| || | | ||||||| || ||||| Sbjct 19047 TACAGCTTCTCAAAGTCATCCCCCCAAACG--TCTTCCAAGCCGGGACACTTGTGAGGAC 18990 Query 151578 ACATTAATGACCATATAC-CGTTTTCTTCAACGCGTTTCATAAATATATCCGGAACCCAT 151636 ||| | ||||| || | | || |||| || || |||||||| | ||| || | ||| Sbjct 18989 ACAACAGCGACCA-ATCCTCATTGGCTTCCACACGCTTCATAAACAGATCGGGTATCCAC 18931 Query 151637 AATGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCATGTGT 151696 || |||| | | |||||| ||| || ||||| |||| |||| | || Sbjct 18930 AAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCC 18871 Query 151697 AAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCGCCTTTTCGC 151756 || | || | || ||| ||||||| ||||| | ||| | || |||||| ||| Sbjct 18870 AAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGCCGC 18811 Query 151757 TT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGG 151809 || |||||||||||| || | ||| ||| ||||||||| |||| ||||| || Sbjct 18810 TTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACTCTGAGCATGGG 18755 >seq20348 Length=30608 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || || || | |||||| |||||||| || ||||||||| | |||| | ||||| Sbjct 12901 ACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCC 12842 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | ||| || || ||| |||||| ||| || ||||| ||||| || ||||||||||| | Sbjct 12841 AATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGA 12782 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || ||| | | ||| | || || | ||||| || |||| ||| | ||||| Sbjct 12781 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 12722 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || | ||||| ||||| |||||||| Sbjct 12721 CCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488383061392800